Gene : SPDS2 A. thaliana TAIR10
Primary Identifier:  ? AT1G70310 Defline:  (1 of 3) K00797 - spermidine synthase (speE, SRM)
Genomic Order:  5989 Name:  ? AT1G70310
Secondary Identifier:  ? PAC:19657216
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BSUBPOLYAMSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-7528 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G70310 0.5kb upstream 0.5kb upstream 2630 true Chr1: 26485306-26487935 Arabidopsis thaliana
AT1G70310 0.5kb upstream 0.5kb upstream 500 false Chr1: 26487436-26487935 Arabidopsis thaliana
AT1G70310 0.5kb downstream 0.5kb downstream 2630 true Chr1: 26484806-26487435 Arabidopsis thaliana
AT1G70310 0.5kb downstream 0.5kb downstream 500 false Chr1: 26484806-26485305 Arabidopsis thaliana
AT1G70310 1.0kb upstream 1.0kb upstream 3130 true Chr1: 26485306-26488435 Arabidopsis thaliana
AT1G70310 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26487436-26488435 Arabidopsis thaliana
AT1G70310 1.0kb downstream 1.0kb downstream 3130 true Chr1: 26484306-26487435 Arabidopsis thaliana
AT1G70310 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26484306-26485305 Arabidopsis thaliana
AT1G70310 2.0kb upstream 2.0kb upstream 4130 true Chr1: 26485306-26489435 Arabidopsis thaliana
AT1G70310 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26487436-26489435 Arabidopsis thaliana
AT1G70310 2.0kb downstream 2.0kb downstream 4130 true Chr1: 26483306-26487435 Arabidopsis thaliana
AT1G70310 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26483306-26485305 Arabidopsis thaliana
AT1G70310 5.0kb upstream 5.0kb upstream 7130 true Chr1: 26485306-26492435 Arabidopsis thaliana
AT1G70310 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26487436-26492435 Arabidopsis thaliana
AT1G70310 5.0kb downstream 5.0kb downstream 7130 true Chr1: 26480306-26487435 Arabidopsis thaliana
AT1G70310 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26480306-26485305 Arabidopsis thaliana
AT1G70310 10.0kb upstream 10.0kb upstream 12130 true Chr1: 26485306-26497435 Arabidopsis thaliana
AT1G70310 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26487436-26497435 Arabidopsis thaliana
AT1G70310 10.0kb downstream 10.0kb downstream 12130 true Chr1: 26475306-26487435 Arabidopsis thaliana
AT1G70310 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26475306-26485305 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343208 5261 Brassicaceae View MSA
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 49.018     High  
cufflinks 83.371     High High
cufflinks 45.902     High  
cufflinks 72.635     High  
cufflinks 41.698     High Low
cufflinks 74.452     High  

0 Strain