Gene : AT1G62610 A. thaliana TAIR10
Defline:  (1 of 8) 1.1.1.100 - 3-oxoacyl-[acyl-carrier-protein] reductase Genomic Order:  5169
Name:  ? AT1G62610 Secondary Identifier:  ? PAC:19655593
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana FASYN-ELONG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5156 Arabidopsis thaliana pathologic  
Athaliana PWY-5971 Arabidopsis thaliana pathologic  
Athaliana PWY-5973 Arabidopsis thaliana pathologic  
Athaliana PWY-5989 Arabidopsis thaliana pathologic  
Athaliana PWY-6282 Arabidopsis thaliana pathologic  
Athaliana PWY-7388 Arabidopsis thaliana pathologic  
Athaliana PWY-7663 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62610 0.5kb upstream 0.5kb upstream 2265 true Chr1: 23181463-23183727 Arabidopsis thaliana
AT1G62610 0.5kb upstream 0.5kb upstream 500 false Chr1: 23183228-23183727 Arabidopsis thaliana
AT1G62610 0.5kb downstream 0.5kb downstream 2265 true Chr1: 23180963-23183227 Arabidopsis thaliana
AT1G62610 0.5kb downstream 0.5kb downstream 500 false Chr1: 23180963-23181462 Arabidopsis thaliana
AT1G62610 1.0kb upstream 1.0kb upstream 2765 true Chr1: 23181463-23184227 Arabidopsis thaliana
AT1G62610 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23183228-23184227 Arabidopsis thaliana
AT1G62610 1.0kb downstream 1.0kb downstream 2765 true Chr1: 23180463-23183227 Arabidopsis thaliana
AT1G62610 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23180463-23181462 Arabidopsis thaliana
AT1G62610 2.0kb upstream 2.0kb upstream 3765 true Chr1: 23181463-23185227 Arabidopsis thaliana
AT1G62610 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23183228-23185227 Arabidopsis thaliana
AT1G62610 2.0kb downstream 2.0kb downstream 3765 true Chr1: 23179463-23183227 Arabidopsis thaliana
AT1G62610 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23179463-23181462 Arabidopsis thaliana
AT1G62610 5.0kb upstream 5.0kb upstream 6765 true Chr1: 23181463-23188227 Arabidopsis thaliana
AT1G62610 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23183228-23188227 Arabidopsis thaliana
AT1G62610 5.0kb downstream 5.0kb downstream 6765 true Chr1: 23176463-23183227 Arabidopsis thaliana
AT1G62610 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23176463-23181462 Arabidopsis thaliana
AT1G62610 10.0kb upstream 10.0kb upstream 11765 true Chr1: 23181463-23193227 Arabidopsis thaliana
AT1G62610 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23183228-23193227 Arabidopsis thaliana
AT1G62610 10.0kb downstream 10.0kb downstream 11765 true Chr1: 23171463-23183227 Arabidopsis thaliana
AT1G62610 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23171463-23181462 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379286 5261 Brassicaceae View MSA
123835400 5264 Brassicales-Malvales View MSA
124349739 5266 SBM View MSA
124251104 5268 Malvidae View MSA
124062329 5270 Rosid View MSA
123751674 5271 Pentapetalae View MSA
122788273 5272 Eudicot View MSA
122044153 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121344803 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.851       Low
cufflinks 3.946        
cufflinks 3.461        
cufflinks 4.121       High
cufflinks 3.694        
cufflinks 3.752        

0 Strain