Gene : SPDS1 A. thaliana TAIR10
Primary Identifier:  ? AT1G23820 Defline:  (1 of 3) K00797 - spermidine synthase (speE, SRM)
Genomic Order:  2413 Name:  ? AT1G23820
Secondary Identifier:  ? PAC:19652492
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana BSUBPOLYAMSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-7528 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G23820 0.5kb upstream 0.5kb upstream 3221 true Chr1: 8419765-8422985 Arabidopsis thaliana
AT1G23820 0.5kb upstream 0.5kb upstream 500 false Chr1: 8419765-8420264 Arabidopsis thaliana
AT1G23820 0.5kb downstream 0.5kb downstream 3221 true Chr1: 8420265-8423485 Arabidopsis thaliana
AT1G23820 0.5kb downstream 0.5kb downstream 500 false Chr1: 8422986-8423485 Arabidopsis thaliana
AT1G23820 1.0kb upstream 1.0kb upstream 3721 true Chr1: 8419265-8422985 Arabidopsis thaliana
AT1G23820 1.0kb upstream 1.0kb upstream 1000 false Chr1: 8419265-8420264 Arabidopsis thaliana
AT1G23820 1.0kb downstream 1.0kb downstream 3721 true Chr1: 8420265-8423985 Arabidopsis thaliana
AT1G23820 1.0kb downstream 1.0kb downstream 1000 false Chr1: 8422986-8423985 Arabidopsis thaliana
AT1G23820 2.0kb upstream 2.0kb upstream 4721 true Chr1: 8418265-8422985 Arabidopsis thaliana
AT1G23820 2.0kb upstream 2.0kb upstream 2000 false Chr1: 8418265-8420264 Arabidopsis thaliana
AT1G23820 2.0kb downstream 2.0kb downstream 4721 true Chr1: 8420265-8424985 Arabidopsis thaliana
AT1G23820 2.0kb downstream 2.0kb downstream 2000 false Chr1: 8422986-8424985 Arabidopsis thaliana
AT1G23820 5.0kb upstream 5.0kb upstream 7721 true Chr1: 8415265-8422985 Arabidopsis thaliana
AT1G23820 5.0kb upstream 5.0kb upstream 5000 false Chr1: 8415265-8420264 Arabidopsis thaliana
AT1G23820 5.0kb downstream 5.0kb downstream 7721 true Chr1: 8420265-8427985 Arabidopsis thaliana
AT1G23820 5.0kb downstream 5.0kb downstream 5000 false Chr1: 8422986-8427985 Arabidopsis thaliana
AT1G23820 10.0kb upstream 10.0kb upstream 12721 true Chr1: 8410265-8422985 Arabidopsis thaliana
AT1G23820 10.0kb upstream 10.0kb upstream 10000 false Chr1: 8410265-8420264 Arabidopsis thaliana
AT1G23820 10.0kb downstream 10.0kb downstream 12721 true Chr1: 8420265-8432985 Arabidopsis thaliana
AT1G23820 10.0kb downstream 10.0kb downstream 10000 false Chr1: 8422986-8432985 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374349 5261 Brassicaceae View MSA
123837275 5264 Brassicales-Malvales View MSA
124342552 5266 SBM View MSA
124246037 5268 Malvidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.715        
cufflinks 26.2        
cufflinks 20.977        
cufflinks 22.042        
cufflinks 17.601       Low
cufflinks 30.292     High High

0 Strain