Gene : AT1G31920 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3162
Name:  ? AT1G31920 Secondary Identifier:  ? PAC:19650726
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G31920 0.5kb upstream 0.5kb upstream 2494 true Chr1: 11461855-11464348 Arabidopsis thaliana
AT1G31920 0.5kb upstream 0.5kb upstream 500 false Chr1: 11463849-11464348 Arabidopsis thaliana
AT1G31920 0.5kb downstream 0.5kb downstream 2494 true Chr1: 11461355-11463848 Arabidopsis thaliana
AT1G31920 0.5kb downstream 0.5kb downstream 500 false Chr1: 11461355-11461854 Arabidopsis thaliana
AT1G31920 1.0kb upstream 1.0kb upstream 2994 true Chr1: 11461855-11464848 Arabidopsis thaliana
AT1G31920 1.0kb upstream 1.0kb upstream 1000 false Chr1: 11463849-11464848 Arabidopsis thaliana
AT1G31920 1.0kb downstream 1.0kb downstream 2994 true Chr1: 11460855-11463848 Arabidopsis thaliana
AT1G31920 1.0kb downstream 1.0kb downstream 1000 false Chr1: 11460855-11461854 Arabidopsis thaliana
AT1G31920 2.0kb upstream 2.0kb upstream 3994 true Chr1: 11461855-11465848 Arabidopsis thaliana
AT1G31920 2.0kb upstream 2.0kb upstream 2000 false Chr1: 11463849-11465848 Arabidopsis thaliana
AT1G31920 2.0kb downstream 2.0kb downstream 3994 true Chr1: 11459855-11463848 Arabidopsis thaliana
AT1G31920 2.0kb downstream 2.0kb downstream 2000 false Chr1: 11459855-11461854 Arabidopsis thaliana
AT1G31920 5.0kb upstream 5.0kb upstream 6994 true Chr1: 11461855-11468848 Arabidopsis thaliana
AT1G31920 5.0kb upstream 5.0kb upstream 5000 false Chr1: 11463849-11468848 Arabidopsis thaliana
AT1G31920 5.0kb downstream 5.0kb downstream 6994 true Chr1: 11456855-11463848 Arabidopsis thaliana
AT1G31920 5.0kb downstream 5.0kb downstream 5000 false Chr1: 11456855-11461854 Arabidopsis thaliana
AT1G31920 10.0kb upstream 10.0kb upstream 11994 true Chr1: 11461855-11473848 Arabidopsis thaliana
AT1G31920 10.0kb upstream 10.0kb upstream 10000 false Chr1: 11463849-11473848 Arabidopsis thaliana
AT1G31920 10.0kb downstream 10.0kb downstream 11994 true Chr1: 11451855-11463848 Arabidopsis thaliana
AT1G31920 10.0kb downstream 10.0kb downstream 10000 false Chr1: 11451855-11461854 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373705 5261 Brassicaceae View MSA
123833353 5264 Brassicales-Malvales View MSA
124338635 5266 SBM View MSA
124239171 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.703        
cufflinks 0.099     Low  
cufflinks 4.979        
cufflinks 0.096     Low  
cufflinks 3.891        
cufflinks 0.039     Low Low

0 Strain