Gene : STO A. thaliana TAIR10
Primary Identifier:  ? AT1G06040 Defline:  (1 of 3) PTHR31832:SF8 - B-BOX TYPE ZINC FINGER-CONTAINING PROTEIN-RELATED
Genomic Order:  535 Name:  ? AT1G06040
Secondary Identifier:  ? PAC:19651295
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G06040 0.5kb upstream 0.5kb upstream 1978 true Chr1: 1828413-1830390 Arabidopsis thaliana
AT1G06040 0.5kb upstream 0.5kb upstream 500 false Chr1: 1829891-1830390 Arabidopsis thaliana
AT1G06040 0.5kb downstream 0.5kb downstream 1978 true Chr1: 1827913-1829890 Arabidopsis thaliana
AT1G06040 0.5kb downstream 0.5kb downstream 500 false Chr1: 1827913-1828412 Arabidopsis thaliana
AT1G06040 1.0kb upstream 1.0kb upstream 2478 true Chr1: 1828413-1830890 Arabidopsis thaliana
AT1G06040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1829891-1830890 Arabidopsis thaliana
AT1G06040 1.0kb downstream 1.0kb downstream 2478 true Chr1: 1827413-1829890 Arabidopsis thaliana
AT1G06040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1827413-1828412 Arabidopsis thaliana
AT1G06040 2.0kb upstream 2.0kb upstream 3478 true Chr1: 1828413-1831890 Arabidopsis thaliana
AT1G06040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1829891-1831890 Arabidopsis thaliana
AT1G06040 2.0kb downstream 2.0kb downstream 3478 true Chr1: 1826413-1829890 Arabidopsis thaliana
AT1G06040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1826413-1828412 Arabidopsis thaliana
AT1G06040 5.0kb upstream 5.0kb upstream 6478 true Chr1: 1828413-1834890 Arabidopsis thaliana
AT1G06040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1829891-1834890 Arabidopsis thaliana
AT1G06040 5.0kb downstream 5.0kb downstream 6478 true Chr1: 1823413-1829890 Arabidopsis thaliana
AT1G06040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1823413-1828412 Arabidopsis thaliana
AT1G06040 10.0kb upstream 10.0kb upstream 11478 true Chr1: 1828413-1839890 Arabidopsis thaliana
AT1G06040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1829891-1839890 Arabidopsis thaliana
AT1G06040 10.0kb downstream 10.0kb downstream 11478 true Chr1: 1818413-1829890 Arabidopsis thaliana
AT1G06040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1818413-1828412 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380594 5261 Brassicaceae View MSA
123836217 5264 Brassicales-Malvales View MSA
124346489 5266 SBM View MSA
124244145 5268 Malvidae View MSA
124064351 5270 Rosid View MSA
123743466 5271 Pentapetalae View MSA
122790570 5272 Eudicot View MSA
122049018 5273 Angiosperm View MSA
121350336 5274 Embryophyte View MSA
123427282 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.193        
cufflinks 5.971        
cufflinks 28.783     High  
cufflinks 9.427        
cufflinks 40.604     High High
cufflinks 3.061       Low

0 Strain