Gene : AT1G06260 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12411//PTHR12411:SF382 - CYSTEINE PROTEASE FAMILY C1-RELATED // CYSTEINE PROTEINASES SUPERFAMILY PROTEIN Genomic Order:  562
Name:  ? AT1G06260 Secondary Identifier:  ? PAC:19655386
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G06260 0.5kb upstream 0.5kb upstream 1656 true Chr1: 1915930-1917585 Arabidopsis thaliana
AT1G06260 0.5kb upstream 0.5kb upstream 500 false Chr1: 1915930-1916429 Arabidopsis thaliana
AT1G06260 0.5kb downstream 0.5kb downstream 1656 true Chr1: 1916430-1918085 Arabidopsis thaliana
AT1G06260 0.5kb downstream 0.5kb downstream 500 false Chr1: 1917586-1918085 Arabidopsis thaliana
AT1G06260 1.0kb upstream 1.0kb upstream 2156 true Chr1: 1915430-1917585 Arabidopsis thaliana
AT1G06260 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1915430-1916429 Arabidopsis thaliana
AT1G06260 1.0kb downstream 1.0kb downstream 2156 true Chr1: 1916430-1918585 Arabidopsis thaliana
AT1G06260 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1917586-1918585 Arabidopsis thaliana
AT1G06260 2.0kb upstream 2.0kb upstream 3156 true Chr1: 1914430-1917585 Arabidopsis thaliana
AT1G06260 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1914430-1916429 Arabidopsis thaliana
AT1G06260 2.0kb downstream 2.0kb downstream 3156 true Chr1: 1916430-1919585 Arabidopsis thaliana
AT1G06260 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1917586-1919585 Arabidopsis thaliana
AT1G06260 5.0kb upstream 5.0kb upstream 6156 true Chr1: 1911430-1917585 Arabidopsis thaliana
AT1G06260 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1911430-1916429 Arabidopsis thaliana
AT1G06260 5.0kb downstream 5.0kb downstream 6156 true Chr1: 1916430-1922585 Arabidopsis thaliana
AT1G06260 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1917586-1922585 Arabidopsis thaliana
AT1G06260 10.0kb upstream 10.0kb upstream 11156 true Chr1: 1906430-1917585 Arabidopsis thaliana
AT1G06260 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1906430-1916429 Arabidopsis thaliana
AT1G06260 10.0kb downstream 10.0kb downstream 11156 true Chr1: 1916430-1927585 Arabidopsis thaliana
AT1G06260 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1917586-1927585 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369305 5261 Brassicaceae View MSA
123831479 5264 Brassicales-Malvales View MSA
124339415 5266 SBM View MSA
124251592 5268 Malvidae View MSA
124074647 5270 Rosid View MSA
123752467 5271 Pentapetalae View MSA
122797682 5272 Eudicot View MSA
122051193 5273 Angiosperm View MSA
121348840 5274 Embryophyte View MSA
123426788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.517        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.117     Low  
cufflinks 0.015     Low Low

0 Strain