Gene : AT1G01100 A. thaliana TAIR10
Defline:  (1 of 6) K02942 - large subunit ribosomal protein LP1 (RP-LP1, RPLP1) Genomic Order:  11
Name:  ? AT1G01100 Secondary Identifier:  ? PAC:19657597
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G01100 0.5kb upstream 0.5kb upstream 1625 true Chr1: 50075-51699 Arabidopsis thaliana
AT1G01100 0.5kb upstream 0.5kb upstream 500 false Chr1: 51200-51699 Arabidopsis thaliana
AT1G01100 0.5kb downstream 0.5kb downstream 1625 true Chr1: 49575-51199 Arabidopsis thaliana
AT1G01100 0.5kb downstream 0.5kb downstream 500 false Chr1: 49575-50074 Arabidopsis thaliana
AT1G01100 1.0kb upstream 1.0kb upstream 2125 true Chr1: 50075-52199 Arabidopsis thaliana
AT1G01100 1.0kb upstream 1.0kb upstream 1000 false Chr1: 51200-52199 Arabidopsis thaliana
AT1G01100 1.0kb downstream 1.0kb downstream 2125 true Chr1: 49075-51199 Arabidopsis thaliana
AT1G01100 1.0kb downstream 1.0kb downstream 1000 false Chr1: 49075-50074 Arabidopsis thaliana
AT1G01100 2.0kb upstream 2.0kb upstream 3125 true Chr1: 50075-53199 Arabidopsis thaliana
AT1G01100 2.0kb upstream 2.0kb upstream 2000 false Chr1: 51200-53199 Arabidopsis thaliana
AT1G01100 2.0kb downstream 2.0kb downstream 3125 true Chr1: 48075-51199 Arabidopsis thaliana
AT1G01100 2.0kb downstream 2.0kb downstream 2000 false Chr1: 48075-50074 Arabidopsis thaliana
AT1G01100 5.0kb upstream 5.0kb upstream 6125 true Chr1: 50075-56199 Arabidopsis thaliana
AT1G01100 5.0kb upstream 5.0kb upstream 5000 false Chr1: 51200-56199 Arabidopsis thaliana
AT1G01100 5.0kb downstream 5.0kb downstream 6125 true Chr1: 45075-51199 Arabidopsis thaliana
AT1G01100 5.0kb downstream 5.0kb downstream 5000 false Chr1: 45075-50074 Arabidopsis thaliana
AT1G01100 10.0kb upstream 10.0kb upstream 11125 true Chr1: 50075-61199 Arabidopsis thaliana
AT1G01100 10.0kb upstream 10.0kb upstream 10000 false Chr1: 51200-61199 Arabidopsis thaliana
AT1G01100 10.0kb downstream 10.0kb downstream 11125 true Chr1: 40075-51199 Arabidopsis thaliana
AT1G01100 10.0kb downstream 10.0kb downstream 10000 false Chr1: 40075-50074 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329034 5261 Brassicaceae Singleton cluster - no MSA
123840228 5264 Brassicales-Malvales View MSA
124346847 5266 SBM View MSA
124250249 5268 Malvidae View MSA
124074239 5270 Rosid View MSA
123751356 5271 Pentapetalae View MSA
122787708 5272 Eudicot View MSA
122049908 5273 Angiosperm View MSA
121345630 5274 Embryophyte View MSA
123424644 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.348     High  
cufflinks 53.271     High  
cufflinks 25.919        
cufflinks 49.718     High  
cufflinks 23.686       Low
cufflinks 56.818     High High

0 Strain