Gene : LOX3 A. thaliana TAIR10
Primary Identifier:  ? AT1G17420 Defline:  (1 of 2) PTHR11771//PTHR11771:SF38 - LIPOXYGENASE // LIPOXYGENASE 3, CHLOROPLASTIC-RELATED
Genomic Order:  1754 Name:  ? AT1G17420
Secondary Identifier:  ? PAC:19652652
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5409 Arabidopsis thaliana pathologic  
Athaliana PWY-5410 Arabidopsis thaliana pathologic  
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17420 0.5kb upstream 0.5kb upstream 4570 true Chr1: 5976911-5981480 Arabidopsis thaliana
AT1G17420 0.5kb upstream 0.5kb upstream 500 false Chr1: 5976911-5977410 Arabidopsis thaliana
AT1G17420 0.5kb downstream 0.5kb downstream 4570 true Chr1: 5977411-5981980 Arabidopsis thaliana
AT1G17420 0.5kb downstream 0.5kb downstream 500 false Chr1: 5981481-5981980 Arabidopsis thaliana
AT1G17420 1.0kb upstream 1.0kb upstream 5070 true Chr1: 5976411-5981480 Arabidopsis thaliana
AT1G17420 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5976411-5977410 Arabidopsis thaliana
AT1G17420 1.0kb downstream 1.0kb downstream 5070 true Chr1: 5977411-5982480 Arabidopsis thaliana
AT1G17420 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5981481-5982480 Arabidopsis thaliana
AT1G17420 2.0kb upstream 2.0kb upstream 6070 true Chr1: 5975411-5981480 Arabidopsis thaliana
AT1G17420 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5975411-5977410 Arabidopsis thaliana
AT1G17420 2.0kb downstream 2.0kb downstream 6070 true Chr1: 5977411-5983480 Arabidopsis thaliana
AT1G17420 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5981481-5983480 Arabidopsis thaliana
AT1G17420 5.0kb upstream 5.0kb upstream 9070 true Chr1: 5972411-5981480 Arabidopsis thaliana
AT1G17420 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5972411-5977410 Arabidopsis thaliana
AT1G17420 5.0kb downstream 5.0kb downstream 9070 true Chr1: 5977411-5986480 Arabidopsis thaliana
AT1G17420 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5981481-5986480 Arabidopsis thaliana
AT1G17420 10.0kb upstream 10.0kb upstream 14070 true Chr1: 5967411-5981480 Arabidopsis thaliana
AT1G17420 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5967411-5977410 Arabidopsis thaliana
AT1G17420 10.0kb downstream 10.0kb downstream 14070 true Chr1: 5977411-5991480 Arabidopsis thaliana
AT1G17420 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5981481-5991480 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372278 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.967       Low
cufflinks 45.852     High High
cufflinks 40.296     High  
cufflinks 20.913        
cufflinks 22.27        
cufflinks 29.659     High  

0 Strain