Gene : AT1G16270 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23257:SF438 - F3O9.7 PROTEIN-RELATED Genomic Order:  1636
Name:  ? AT1G16270 Secondary Identifier:  ? PAC:19650815
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16270 0.5kb upstream 0.5kb upstream 5782 true Chr1: 5562587-5568368 Arabidopsis thaliana
AT1G16270 0.5kb upstream 0.5kb upstream 500 false Chr1: 5562587-5563086 Arabidopsis thaliana
AT1G16270 0.5kb downstream 0.5kb downstream 5782 true Chr1: 5563087-5568868 Arabidopsis thaliana
AT1G16270 0.5kb downstream 0.5kb downstream 500 false Chr1: 5568369-5568868 Arabidopsis thaliana
AT1G16270 1.0kb upstream 1.0kb upstream 6282 true Chr1: 5562087-5568368 Arabidopsis thaliana
AT1G16270 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5562087-5563086 Arabidopsis thaliana
AT1G16270 1.0kb downstream 1.0kb downstream 6282 true Chr1: 5563087-5569368 Arabidopsis thaliana
AT1G16270 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5568369-5569368 Arabidopsis thaliana
AT1G16270 2.0kb upstream 2.0kb upstream 7282 true Chr1: 5561087-5568368 Arabidopsis thaliana
AT1G16270 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5561087-5563086 Arabidopsis thaliana
AT1G16270 2.0kb downstream 2.0kb downstream 7282 true Chr1: 5563087-5570368 Arabidopsis thaliana
AT1G16270 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5568369-5570368 Arabidopsis thaliana
AT1G16270 5.0kb upstream 5.0kb upstream 10282 true Chr1: 5558087-5568368 Arabidopsis thaliana
AT1G16270 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5558087-5563086 Arabidopsis thaliana
AT1G16270 5.0kb downstream 5.0kb downstream 10282 true Chr1: 5563087-5573368 Arabidopsis thaliana
AT1G16270 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5568369-5573368 Arabidopsis thaliana
AT1G16270 10.0kb upstream 10.0kb upstream 15282 true Chr1: 5553087-5568368 Arabidopsis thaliana
AT1G16270 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5553087-5563086 Arabidopsis thaliana
AT1G16270 10.0kb downstream 10.0kb downstream 15282 true Chr1: 5563087-5578368 Arabidopsis thaliana
AT1G16270 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5568369-5578368 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373301 5261 Brassicaceae View MSA
123800529 5264 Brassicales-Malvales View MSA
124297936 5266 SBM View MSA
124251451 5268 Malvidae View MSA
124066314 5270 Rosid View MSA
123749730 5271 Pentapetalae View MSA
122796699 5272 Eudicot View MSA
122043276 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121350927 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.915        
cufflinks 6.303        
cufflinks 3.234       Low
cufflinks 7.331       High
cufflinks 3.563        
cufflinks 7.071        

0 Strain