Gene : RBP45B A. thaliana TAIR10
Primary Identifier:  ? AT1G11650 Defline:  (1 of 1) KOG0131//KOG0145//KOG0148//KOG0226 - Splicing factor 3b, subunit 4 // RNA-binding protein ELAV/HU (RRM superfamily) // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) // RNA-binding proteins
Genomic Order:  1140 Name:  ? AT1G11650
Secondary Identifier:  ? PAC:19656084
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G11650 0.5kb upstream 0.5kb upstream 3903 true Chr1: 3914274-3918176 Arabidopsis thaliana
AT1G11650 0.5kb upstream 0.5kb upstream 500 false Chr1: 3914274-3914773 Arabidopsis thaliana
AT1G11650 0.5kb downstream 0.5kb downstream 3903 true Chr1: 3914774-3918676 Arabidopsis thaliana
AT1G11650 0.5kb downstream 0.5kb downstream 500 false Chr1: 3918177-3918676 Arabidopsis thaliana
AT1G11650 1.0kb upstream 1.0kb upstream 4403 true Chr1: 3913774-3918176 Arabidopsis thaliana
AT1G11650 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3913774-3914773 Arabidopsis thaliana
AT1G11650 1.0kb downstream 1.0kb downstream 4403 true Chr1: 3914774-3919176 Arabidopsis thaliana
AT1G11650 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3918177-3919176 Arabidopsis thaliana
AT1G11650 2.0kb upstream 2.0kb upstream 5403 true Chr1: 3912774-3918176 Arabidopsis thaliana
AT1G11650 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3912774-3914773 Arabidopsis thaliana
AT1G11650 2.0kb downstream 2.0kb downstream 5403 true Chr1: 3914774-3920176 Arabidopsis thaliana
AT1G11650 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3918177-3920176 Arabidopsis thaliana
AT1G11650 5.0kb upstream 5.0kb upstream 8403 true Chr1: 3909774-3918176 Arabidopsis thaliana
AT1G11650 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3909774-3914773 Arabidopsis thaliana
AT1G11650 5.0kb downstream 5.0kb downstream 8403 true Chr1: 3914774-3923176 Arabidopsis thaliana
AT1G11650 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3918177-3923176 Arabidopsis thaliana
AT1G11650 10.0kb upstream 10.0kb upstream 13403 true Chr1: 3904774-3918176 Arabidopsis thaliana
AT1G11650 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3904774-3914773 Arabidopsis thaliana
AT1G11650 10.0kb downstream 10.0kb downstream 13403 true Chr1: 3914774-3928176 Arabidopsis thaliana
AT1G11650 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3918177-3928176 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370365 5261 Brassicaceae View MSA
123829322 5264 Brassicales-Malvales View MSA
124345691 5266 SBM View MSA
124242646 5268 Malvidae View MSA
124066893 5270 Rosid View MSA
123742056 5271 Pentapetalae View MSA
122786744 5272 Eudicot View MSA
122051452 5273 Angiosperm View MSA
121351371 5274 Embryophyte View MSA
123424048 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.985     High High
cufflinks 18.525       Low
cufflinks 23.4        
cufflinks 19.613        
cufflinks 24.546        
cufflinks 21.318        

0 Strain