Gene : AT1G11940 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31042//PTHR31042:SF2 - FAMILY NOT NAMED // CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN Genomic Order:  1176
Name:  ? AT1G11940 Secondary Identifier:  ? PAC:19657566
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G11940 0.5kb upstream 0.5kb upstream 3005 true Chr1: 4031574-4034578 Arabidopsis thaliana
AT1G11940 0.5kb upstream 0.5kb upstream 500 false Chr1: 4034079-4034578 Arabidopsis thaliana
AT1G11940 0.5kb downstream 0.5kb downstream 3005 true Chr1: 4031074-4034078 Arabidopsis thaliana
AT1G11940 0.5kb downstream 0.5kb downstream 500 false Chr1: 4031074-4031573 Arabidopsis thaliana
AT1G11940 1.0kb upstream 1.0kb upstream 3505 true Chr1: 4031574-4035078 Arabidopsis thaliana
AT1G11940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4034079-4035078 Arabidopsis thaliana
AT1G11940 1.0kb downstream 1.0kb downstream 3505 true Chr1: 4030574-4034078 Arabidopsis thaliana
AT1G11940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4030574-4031573 Arabidopsis thaliana
AT1G11940 2.0kb upstream 2.0kb upstream 4505 true Chr1: 4031574-4036078 Arabidopsis thaliana
AT1G11940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4034079-4036078 Arabidopsis thaliana
AT1G11940 2.0kb downstream 2.0kb downstream 4505 true Chr1: 4029574-4034078 Arabidopsis thaliana
AT1G11940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4029574-4031573 Arabidopsis thaliana
AT1G11940 5.0kb upstream 5.0kb upstream 7505 true Chr1: 4031574-4039078 Arabidopsis thaliana
AT1G11940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4034079-4039078 Arabidopsis thaliana
AT1G11940 5.0kb downstream 5.0kb downstream 7505 true Chr1: 4026574-4034078 Arabidopsis thaliana
AT1G11940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4026574-4031573 Arabidopsis thaliana
AT1G11940 10.0kb upstream 10.0kb upstream 12505 true Chr1: 4031574-4044078 Arabidopsis thaliana
AT1G11940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4034079-4044078 Arabidopsis thaliana
AT1G11940 10.0kb downstream 10.0kb downstream 12505 true Chr1: 4021574-4034078 Arabidopsis thaliana
AT1G11940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4021574-4031573 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361224 5261 Brassicaceae View MSA
123836991 5264 Brassicales-Malvales View MSA
124341705 5266 SBM View MSA
124249568 5268 Malvidae View MSA
124066667 5270 Rosid View MSA
123753722 5271 Pentapetalae View MSA
122788010 5272 Eudicot View MSA
122051448 5273 Angiosperm View MSA
121351490 5274 Embryophyte View MSA
123428085 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.852        
cufflinks 4.931        
cufflinks 1.934       Low
cufflinks 4.696        
cufflinks 2.305        
cufflinks 4.651        

0 Strain