Gene : AT3G57680 A. thaliana TAIR10
Defline:  (1 of 1) PTHR32060//PTHR32060:SF5 - FAMILY NOT NAMED // PEPTIDASE S41 FAMILY PROTEIN Genomic Order:  4822
Name:  ? AT3G57680 Secondary Identifier:  ? PAC:19663343
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57680 0.5kb upstream 0.5kb upstream 3076 true Chr3: 21380554-21383629 Arabidopsis thaliana
AT3G57680 0.5kb upstream 0.5kb upstream 500 false Chr3: 21380554-21381053 Arabidopsis thaliana
AT3G57680 0.5kb downstream 0.5kb downstream 3076 true Chr3: 21381054-21384129 Arabidopsis thaliana
AT3G57680 0.5kb downstream 0.5kb downstream 500 false Chr3: 21383630-21384129 Arabidopsis thaliana
AT3G57680 1.0kb upstream 1.0kb upstream 3576 true Chr3: 21380054-21383629 Arabidopsis thaliana
AT3G57680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21380054-21381053 Arabidopsis thaliana
AT3G57680 1.0kb downstream 1.0kb downstream 3576 true Chr3: 21381054-21384629 Arabidopsis thaliana
AT3G57680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21383630-21384629 Arabidopsis thaliana
AT3G57680 2.0kb upstream 2.0kb upstream 4576 true Chr3: 21379054-21383629 Arabidopsis thaliana
AT3G57680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21379054-21381053 Arabidopsis thaliana
AT3G57680 2.0kb downstream 2.0kb downstream 4576 true Chr3: 21381054-21385629 Arabidopsis thaliana
AT3G57680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21383630-21385629 Arabidopsis thaliana
AT3G57680 5.0kb upstream 5.0kb upstream 7576 true Chr3: 21376054-21383629 Arabidopsis thaliana
AT3G57680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21376054-21381053 Arabidopsis thaliana
AT3G57680 5.0kb downstream 5.0kb downstream 7576 true Chr3: 21381054-21388629 Arabidopsis thaliana
AT3G57680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21383630-21388629 Arabidopsis thaliana
AT3G57680 10.0kb upstream 10.0kb upstream 12576 true Chr3: 21371054-21383629 Arabidopsis thaliana
AT3G57680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21371054-21381053 Arabidopsis thaliana
AT3G57680 10.0kb downstream 10.0kb downstream 12576 true Chr3: 21381054-21393629 Arabidopsis thaliana
AT3G57680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21383630-21393629 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368502 5261 Brassicaceae View MSA
123833736 5264 Brassicales-Malvales View MSA
124344326 5266 SBM View MSA
124241182 5268 Malvidae View MSA
124067305 5270 Rosid View MSA
123750616 5271 Pentapetalae View MSA
122792134 5272 Eudicot View MSA
122042962 5273 Angiosperm View MSA
121346288 5274 Embryophyte View MSA
123424698 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.484        
cufflinks 0.059     Low  
cufflinks 2.552        
cufflinks 0.158     Low  
cufflinks 4.832       High
cufflinks 0.032     Low Low

0 Strain