Gene : AT3G49340 A. thaliana TAIR10
Defline:  (1 of 7) 3.4.22.33 - Fruit bromelain Genomic Order:  3932
Name:  ? AT3G49340 Secondary Identifier:  ? PAC:19663630
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49340 0.5kb upstream 0.5kb upstream 1731 true Chr3: 18293347-18295077 Arabidopsis thaliana
AT3G49340 0.5kb upstream 0.5kb upstream 500 false Chr3: 18294578-18295077 Arabidopsis thaliana
AT3G49340 0.5kb downstream 0.5kb downstream 1731 true Chr3: 18292847-18294577 Arabidopsis thaliana
AT3G49340 0.5kb downstream 0.5kb downstream 500 false Chr3: 18292847-18293346 Arabidopsis thaliana
AT3G49340 1.0kb upstream 1.0kb upstream 2231 true Chr3: 18293347-18295577 Arabidopsis thaliana
AT3G49340 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18294578-18295577 Arabidopsis thaliana
AT3G49340 1.0kb downstream 1.0kb downstream 2231 true Chr3: 18292347-18294577 Arabidopsis thaliana
AT3G49340 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18292347-18293346 Arabidopsis thaliana
AT3G49340 2.0kb upstream 2.0kb upstream 3231 true Chr3: 18293347-18296577 Arabidopsis thaliana
AT3G49340 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18294578-18296577 Arabidopsis thaliana
AT3G49340 2.0kb downstream 2.0kb downstream 3231 true Chr3: 18291347-18294577 Arabidopsis thaliana
AT3G49340 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18291347-18293346 Arabidopsis thaliana
AT3G49340 5.0kb upstream 5.0kb upstream 6231 true Chr3: 18293347-18299577 Arabidopsis thaliana
AT3G49340 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18294578-18299577 Arabidopsis thaliana
AT3G49340 5.0kb downstream 5.0kb downstream 6231 true Chr3: 18288347-18294577 Arabidopsis thaliana
AT3G49340 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18288347-18293346 Arabidopsis thaliana
AT3G49340 10.0kb upstream 10.0kb upstream 11231 true Chr3: 18293347-18304577 Arabidopsis thaliana
AT3G49340 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18294578-18304577 Arabidopsis thaliana
AT3G49340 10.0kb downstream 10.0kb downstream 11231 true Chr3: 18283347-18294577 Arabidopsis thaliana
AT3G49340 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18283347-18293346 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381678 5261 Brassicaceae View MSA
123841573 5264 Brassicales-Malvales View MSA
124341900 5266 SBM View MSA
124254446 5268 Malvidae View MSA
124074647 5270 Rosid View MSA
123752467 5271 Pentapetalae View MSA
122797682 5272 Eudicot View MSA
122051193 5273 Angiosperm View MSA
121348840 5274 Embryophyte View MSA
123426788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.54       High
cufflinks 0.037     Low  
cufflinks 3.348        
cufflinks 0.043     Low  
cufflinks 11.714       High
cufflinks 0.014     Low Low

0 Strain