Gene : AT3G48210 A. thaliana TAIR10
Defline:  (1 of 1) PTHR14281:SF0 - KINETOCHORE PROTEIN SPC25 Genomic Order:  3811
Name:  ? AT3G48210 Secondary Identifier:  ? PAC:19661363
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48210 0.5kb upstream 0.5kb upstream 2825 true Chr3: 17848859-17851683 Arabidopsis thaliana
AT3G48210 0.5kb upstream 0.5kb upstream 500 false Chr3: 17848859-17849358 Arabidopsis thaliana
AT3G48210 0.5kb downstream 0.5kb downstream 2825 true Chr3: 17849359-17852183 Arabidopsis thaliana
AT3G48210 0.5kb downstream 0.5kb downstream 500 false Chr3: 17851684-17852183 Arabidopsis thaliana
AT3G48210 1.0kb upstream 1.0kb upstream 3325 true Chr3: 17848359-17851683 Arabidopsis thaliana
AT3G48210 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17848359-17849358 Arabidopsis thaliana
AT3G48210 1.0kb downstream 1.0kb downstream 3325 true Chr3: 17849359-17852683 Arabidopsis thaliana
AT3G48210 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17851684-17852683 Arabidopsis thaliana
AT3G48210 2.0kb upstream 2.0kb upstream 4325 true Chr3: 17847359-17851683 Arabidopsis thaliana
AT3G48210 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17847359-17849358 Arabidopsis thaliana
AT3G48210 2.0kb downstream 2.0kb downstream 4325 true Chr3: 17849359-17853683 Arabidopsis thaliana
AT3G48210 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17851684-17853683 Arabidopsis thaliana
AT3G48210 5.0kb upstream 5.0kb upstream 7325 true Chr3: 17844359-17851683 Arabidopsis thaliana
AT3G48210 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17844359-17849358 Arabidopsis thaliana
AT3G48210 5.0kb downstream 5.0kb downstream 7325 true Chr3: 17849359-17856683 Arabidopsis thaliana
AT3G48210 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17851684-17856683 Arabidopsis thaliana
AT3G48210 10.0kb upstream 10.0kb upstream 12325 true Chr3: 17839359-17851683 Arabidopsis thaliana
AT3G48210 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17839359-17849358 Arabidopsis thaliana
AT3G48210 10.0kb downstream 10.0kb downstream 12325 true Chr3: 17849359-17861683 Arabidopsis thaliana
AT3G48210 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17851684-17861683 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373376 5261 Brassicaceae View MSA
123828175 5264 Brassicales-Malvales View MSA
124338806 5266 SBM View MSA
124248209 5268 Malvidae View MSA
124060731 5270 Rosid View MSA
123740734 5271 Pentapetalae View MSA
122790500 5272 Eudicot View MSA
122047601 5273 Angiosperm View MSA
121348266 5274 Embryophyte View MSA
123424992 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.851        
cufflinks 10.769        
cufflinks 3.596       Low
cufflinks 10.337        
cufflinks 3.922        
cufflinks 10.423        

0 Strain