Gene : AT3G28956 A. thaliana TAIR10
Defline:  (1 of 2) PTHR15561//PTHR15561:SF0 - CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN // DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9 Genomic Order:  3070
Name:  ? AT3G28956 Secondary Identifier:  ? PAC:19663060
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G28956 0.5kb upstream 0.5kb upstream 2045 true Chr3: 10980700-10982744 Arabidopsis thaliana
AT3G28956 0.5kb upstream 0.5kb upstream 500 false Chr3: 10982245-10982744 Arabidopsis thaliana
AT3G28956 0.5kb downstream 0.5kb downstream 2045 true Chr3: 10980200-10982244 Arabidopsis thaliana
AT3G28956 0.5kb downstream 0.5kb downstream 500 false Chr3: 10980200-10980699 Arabidopsis thaliana
AT3G28956 1.0kb upstream 1.0kb upstream 2545 true Chr3: 10980700-10983244 Arabidopsis thaliana
AT3G28956 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10982245-10983244 Arabidopsis thaliana
AT3G28956 1.0kb downstream 1.0kb downstream 2545 true Chr3: 10979700-10982244 Arabidopsis thaliana
AT3G28956 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10979700-10980699 Arabidopsis thaliana
AT3G28956 2.0kb upstream 2.0kb upstream 3545 true Chr3: 10980700-10984244 Arabidopsis thaliana
AT3G28956 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10982245-10984244 Arabidopsis thaliana
AT3G28956 2.0kb downstream 2.0kb downstream 3545 true Chr3: 10978700-10982244 Arabidopsis thaliana
AT3G28956 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10978700-10980699 Arabidopsis thaliana
AT3G28956 5.0kb upstream 5.0kb upstream 6545 true Chr3: 10980700-10987244 Arabidopsis thaliana
AT3G28956 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10982245-10987244 Arabidopsis thaliana
AT3G28956 5.0kb downstream 5.0kb downstream 6545 true Chr3: 10975700-10982244 Arabidopsis thaliana
AT3G28956 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10975700-10980699 Arabidopsis thaliana
AT3G28956 10.0kb upstream 10.0kb upstream 11545 true Chr3: 10980700-10992244 Arabidopsis thaliana
AT3G28956 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10982245-10992244 Arabidopsis thaliana
AT3G28956 10.0kb downstream 10.0kb downstream 11545 true Chr3: 10970700-10982244 Arabidopsis thaliana
AT3G28956 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10970700-10980699 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380428 5261 Brassicaceae View MSA
123802711 5264 Brassicales-Malvales View MSA
124339362 5266 SBM View MSA
124241908 5268 Malvidae View MSA
124063506 5270 Rosid View MSA
123740278 5271 Pentapetalae View MSA
122796140 5272 Eudicot View MSA
122047210 5273 Angiosperm View MSA
121347420 5274 Embryophyte View MSA
123427400 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.585       Low
cufflinks 5.209       High
cufflinks 3.967        
cufflinks 4.261        
cufflinks 3.555        
cufflinks 3.649        

0 Strain