Gene : ELC A. thaliana TAIR10
Primary Identifier:  ? AT3G12400 Defline:  (1 of 3) K12183 - ESCRT-I complex subunit TSG101 (TSG101, STP22, VPS23)
Genomic Order:  1220 Name:  ? AT3G12400
Secondary Identifier:  ? PAC:19663128
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12400 0.5kb upstream 0.5kb upstream 2056 true Chr3: 3944296-3946351 Arabidopsis thaliana
AT3G12400 0.5kb upstream 0.5kb upstream 500 false Chr3: 3945852-3946351 Arabidopsis thaliana
AT3G12400 0.5kb downstream 0.5kb downstream 2056 true Chr3: 3943796-3945851 Arabidopsis thaliana
AT3G12400 0.5kb downstream 0.5kb downstream 500 false Chr3: 3943796-3944295 Arabidopsis thaliana
AT3G12400 1.0kb upstream 1.0kb upstream 2556 true Chr3: 3944296-3946851 Arabidopsis thaliana
AT3G12400 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3945852-3946851 Arabidopsis thaliana
AT3G12400 1.0kb downstream 1.0kb downstream 2556 true Chr3: 3943296-3945851 Arabidopsis thaliana
AT3G12400 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3943296-3944295 Arabidopsis thaliana
AT3G12400 2.0kb upstream 2.0kb upstream 3556 true Chr3: 3944296-3947851 Arabidopsis thaliana
AT3G12400 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3945852-3947851 Arabidopsis thaliana
AT3G12400 2.0kb downstream 2.0kb downstream 3556 true Chr3: 3942296-3945851 Arabidopsis thaliana
AT3G12400 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3942296-3944295 Arabidopsis thaliana
AT3G12400 5.0kb upstream 5.0kb upstream 6556 true Chr3: 3944296-3950851 Arabidopsis thaliana
AT3G12400 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3945852-3950851 Arabidopsis thaliana
AT3G12400 5.0kb downstream 5.0kb downstream 6556 true Chr3: 3939296-3945851 Arabidopsis thaliana
AT3G12400 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3939296-3944295 Arabidopsis thaliana
AT3G12400 10.0kb upstream 10.0kb upstream 11556 true Chr3: 3944296-3955851 Arabidopsis thaliana
AT3G12400 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3945852-3955851 Arabidopsis thaliana
AT3G12400 10.0kb downstream 10.0kb downstream 11556 true Chr3: 3934296-3945851 Arabidopsis thaliana
AT3G12400 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3934296-3944295 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367293 5261 Brassicaceae View MSA
123840288 5264 Brassicales-Malvales View MSA
124340061 5266 SBM View MSA
124243180 5268 Malvidae View MSA
124067551 5270 Rosid View MSA
123747284 5271 Pentapetalae View MSA
122786974 5272 Eudicot View MSA
122050424 5273 Angiosperm View MSA
121347695 5274 Embryophyte View MSA
123427966 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.768       Low
cufflinks 40.155     High High
cufflinks 22.919        
cufflinks 35.724     High  
cufflinks 22.74        
cufflinks 40.154     High High

0 Strain