Gene : AT3G48425 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22748//PTHR22748:SF1 - AP ENDONUCLEASE // DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE Genomic Order:  3837
Name:  ? AT3G48425 Secondary Identifier:  ? PAC:19661601
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48425 0.5kb upstream 0.5kb upstream 3427 true Chr3: 17931318-17934744 Arabidopsis thaliana
AT3G48425 0.5kb upstream 0.5kb upstream 500 false Chr3: 17931318-17931817 Arabidopsis thaliana
AT3G48425 0.5kb downstream 0.5kb downstream 3427 true Chr3: 17931818-17935244 Arabidopsis thaliana
AT3G48425 0.5kb downstream 0.5kb downstream 500 false Chr3: 17934745-17935244 Arabidopsis thaliana
AT3G48425 1.0kb upstream 1.0kb upstream 3927 true Chr3: 17930818-17934744 Arabidopsis thaliana
AT3G48425 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17930818-17931817 Arabidopsis thaliana
AT3G48425 1.0kb downstream 1.0kb downstream 3927 true Chr3: 17931818-17935744 Arabidopsis thaliana
AT3G48425 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17934745-17935744 Arabidopsis thaliana
AT3G48425 2.0kb upstream 2.0kb upstream 4927 true Chr3: 17929818-17934744 Arabidopsis thaliana
AT3G48425 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17929818-17931817 Arabidopsis thaliana
AT3G48425 2.0kb downstream 2.0kb downstream 4927 true Chr3: 17931818-17936744 Arabidopsis thaliana
AT3G48425 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17934745-17936744 Arabidopsis thaliana
AT3G48425 5.0kb upstream 5.0kb upstream 7927 true Chr3: 17926818-17934744 Arabidopsis thaliana
AT3G48425 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17926818-17931817 Arabidopsis thaliana
AT3G48425 5.0kb downstream 5.0kb downstream 7927 true Chr3: 17931818-17939744 Arabidopsis thaliana
AT3G48425 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17934745-17939744 Arabidopsis thaliana
AT3G48425 10.0kb upstream 10.0kb upstream 12927 true Chr3: 17921818-17934744 Arabidopsis thaliana
AT3G48425 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17921818-17931817 Arabidopsis thaliana
AT3G48425 10.0kb downstream 10.0kb downstream 12927 true Chr3: 17931818-17944744 Arabidopsis thaliana
AT3G48425 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17934745-17944744 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369113 5261 Brassicaceae View MSA
123829586 5264 Brassicales-Malvales View MSA
124344987 5266 SBM View MSA
124238508 5268 Malvidae View MSA
124067356 5270 Rosid View MSA
123738346 5271 Pentapetalae View MSA
122788996 5272 Eudicot View MSA
122047009 5273 Angiosperm View MSA
121351497 5274 Embryophyte View MSA
123426911 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.91        
cufflinks 3.285        
cufflinks 1.701        
cufflinks 3.386        
cufflinks 1.258       Low
cufflinks 3.79       High

0 Strain