Gene : NF-YC1 A. thaliana TAIR10
Primary Identifier:  ? AT3G48590 Defline:  (1 of 4) PTHR10252//PTHR10252:SF39 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED // NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-1-RELATED
Genomic Order:  3854 Name:  ? AT3G48590
Secondary Identifier:  ? PAC:19659700
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48590 0.5kb upstream 0.5kb upstream 1826 true Chr3: 18008657-18010482 Arabidopsis thaliana
AT3G48590 0.5kb upstream 0.5kb upstream 500 false Chr3: 18009983-18010482 Arabidopsis thaliana
AT3G48590 0.5kb downstream 0.5kb downstream 1826 true Chr3: 18008157-18009982 Arabidopsis thaliana
AT3G48590 0.5kb downstream 0.5kb downstream 500 false Chr3: 18008157-18008656 Arabidopsis thaliana
AT3G48590 1.0kb upstream 1.0kb upstream 2326 true Chr3: 18008657-18010982 Arabidopsis thaliana
AT3G48590 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18009983-18010982 Arabidopsis thaliana
AT3G48590 1.0kb downstream 1.0kb downstream 2326 true Chr3: 18007657-18009982 Arabidopsis thaliana
AT3G48590 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18007657-18008656 Arabidopsis thaliana
AT3G48590 2.0kb upstream 2.0kb upstream 3326 true Chr3: 18008657-18011982 Arabidopsis thaliana
AT3G48590 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18009983-18011982 Arabidopsis thaliana
AT3G48590 2.0kb downstream 2.0kb downstream 3326 true Chr3: 18006657-18009982 Arabidopsis thaliana
AT3G48590 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18006657-18008656 Arabidopsis thaliana
AT3G48590 5.0kb upstream 5.0kb upstream 6326 true Chr3: 18008657-18014982 Arabidopsis thaliana
AT3G48590 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18009983-18014982 Arabidopsis thaliana
AT3G48590 5.0kb downstream 5.0kb downstream 6326 true Chr3: 18003657-18009982 Arabidopsis thaliana
AT3G48590 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18003657-18008656 Arabidopsis thaliana
AT3G48590 10.0kb upstream 10.0kb upstream 11326 true Chr3: 18008657-18019982 Arabidopsis thaliana
AT3G48590 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18009983-18019982 Arabidopsis thaliana
AT3G48590 10.0kb downstream 10.0kb downstream 11326 true Chr3: 17998657-18009982 Arabidopsis thaliana
AT3G48590 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17998657-18008656 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381381 5261 Brassicaceae View MSA
123840836 5264 Brassicales-Malvales View MSA
124344092 5266 SBM View MSA
124241010 5268 Malvidae View MSA
124063983 5270 Rosid View MSA
123739955 5271 Pentapetalae View MSA
122787059 5272 Eudicot View MSA
122049205 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.375       High
cufflinks 5.977        
cufflinks 13.295        
cufflinks 6.103        
cufflinks 14.304        
cufflinks 5.425       Low

0 Strain