Gene : AT3G54460 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10799:SF573 - TRANSCRIPTION TERMINATION FACTOR 2 Genomic Order:  4484
Name:  ? AT3G54460 Secondary Identifier:  ? PAC:19659233
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54460 0.5kb upstream 0.5kb upstream 5852 true Chr3: 20161942-20167793 Arabidopsis thaliana
AT3G54460 0.5kb upstream 0.5kb upstream 500 false Chr3: 20167294-20167793 Arabidopsis thaliana
AT3G54460 0.5kb downstream 0.5kb downstream 5852 true Chr3: 20161442-20167293 Arabidopsis thaliana
AT3G54460 0.5kb downstream 0.5kb downstream 500 false Chr3: 20161442-20161941 Arabidopsis thaliana
AT3G54460 1.0kb upstream 1.0kb upstream 6352 true Chr3: 20161942-20168293 Arabidopsis thaliana
AT3G54460 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20167294-20168293 Arabidopsis thaliana
AT3G54460 1.0kb downstream 1.0kb downstream 6352 true Chr3: 20160942-20167293 Arabidopsis thaliana
AT3G54460 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20160942-20161941 Arabidopsis thaliana
AT3G54460 2.0kb upstream 2.0kb upstream 7352 true Chr3: 20161942-20169293 Arabidopsis thaliana
AT3G54460 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20167294-20169293 Arabidopsis thaliana
AT3G54460 2.0kb downstream 2.0kb downstream 7352 true Chr3: 20159942-20167293 Arabidopsis thaliana
AT3G54460 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20159942-20161941 Arabidopsis thaliana
AT3G54460 5.0kb upstream 5.0kb upstream 10352 true Chr3: 20161942-20172293 Arabidopsis thaliana
AT3G54460 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20167294-20172293 Arabidopsis thaliana
AT3G54460 5.0kb downstream 5.0kb downstream 10352 true Chr3: 20156942-20167293 Arabidopsis thaliana
AT3G54460 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20156942-20161941 Arabidopsis thaliana
AT3G54460 10.0kb upstream 10.0kb upstream 15352 true Chr3: 20161942-20177293 Arabidopsis thaliana
AT3G54460 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20167294-20177293 Arabidopsis thaliana
AT3G54460 10.0kb downstream 10.0kb downstream 15352 true Chr3: 20151942-20167293 Arabidopsis thaliana
AT3G54460 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20151942-20161941 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364481 5261 Brassicaceae View MSA
123834595 5264 Brassicales-Malvales View MSA
124344795 5266 SBM View MSA
124237077 5268 Malvidae View MSA
124067561 5270 Rosid View MSA
123738895 5271 Pentapetalae View MSA
122788096 5272 Eudicot View MSA
122041978 5273 Angiosperm View MSA
121346055 5274 Embryophyte View MSA
123424068 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.564        
cufflinks 5.111       Low
cufflinks 9.162        
cufflinks 6.62        
cufflinks 11.535       High
cufflinks 5.51        

0 Strain