Gene : AT3G54880 A. thaliana TAIR10
Defline:  (1 of 6) PF13259 - Protein of unknown function (DUF4050) (DUF4050) Genomic Order:  4529
Name:  ? AT3G54880 Secondary Identifier:  ? PAC:19664514
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54880 0.5kb upstream 0.5kb upstream 2167 true Chr3: 20336856-20339022 Arabidopsis thaliana
AT3G54880 0.5kb upstream 0.5kb upstream 500 false Chr3: 20338523-20339022 Arabidopsis thaliana
AT3G54880 0.5kb downstream 0.5kb downstream 2167 true Chr3: 20336356-20338522 Arabidopsis thaliana
AT3G54880 0.5kb downstream 0.5kb downstream 500 false Chr3: 20336356-20336855 Arabidopsis thaliana
AT3G54880 1.0kb upstream 1.0kb upstream 2667 true Chr3: 20336856-20339522 Arabidopsis thaliana
AT3G54880 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20338523-20339522 Arabidopsis thaliana
AT3G54880 1.0kb downstream 1.0kb downstream 2667 true Chr3: 20335856-20338522 Arabidopsis thaliana
AT3G54880 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20335856-20336855 Arabidopsis thaliana
AT3G54880 2.0kb upstream 2.0kb upstream 3667 true Chr3: 20336856-20340522 Arabidopsis thaliana
AT3G54880 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20338523-20340522 Arabidopsis thaliana
AT3G54880 2.0kb downstream 2.0kb downstream 3667 true Chr3: 20334856-20338522 Arabidopsis thaliana
AT3G54880 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20334856-20336855 Arabidopsis thaliana
AT3G54880 5.0kb upstream 5.0kb upstream 6667 true Chr3: 20336856-20343522 Arabidopsis thaliana
AT3G54880 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20338523-20343522 Arabidopsis thaliana
AT3G54880 5.0kb downstream 5.0kb downstream 6667 true Chr3: 20331856-20338522 Arabidopsis thaliana
AT3G54880 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20331856-20336855 Arabidopsis thaliana
AT3G54880 10.0kb upstream 10.0kb upstream 11667 true Chr3: 20336856-20348522 Arabidopsis thaliana
AT3G54880 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20338523-20348522 Arabidopsis thaliana
AT3G54880 10.0kb downstream 10.0kb downstream 11667 true Chr3: 20326856-20338522 Arabidopsis thaliana
AT3G54880 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20326856-20336855 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363929 5261 Brassicaceae View MSA
123839655 5264 Brassicales-Malvales View MSA
124338127 5266 SBM View MSA
124249664 5268 Malvidae View MSA
124069414 5270 Rosid View MSA
123751725 5271 Pentapetalae View MSA
122774149 5272 Eudicot View MSA
122042396 5273 Angiosperm View MSA
121349400 5274 Embryophyte View MSA
123427795 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.473       Low
cufflinks 32.001     High High
cufflinks 16.226        
cufflinks 30.348     High  
cufflinks 12.842        
cufflinks 25.383        

0 Strain