Gene : ATVPS33 A. thaliana TAIR10
Primary Identifier:  ? AT3G54860 Defline:  (1 of 1) PTHR11679:SF1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33B
Genomic Order:  4527 Name:  ? AT3G54860
Secondary Identifier:  ? PAC:19664046
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G54860 0.5kb upstream 0.5kb upstream 6328 true Chr3: 20324090-20330417 Arabidopsis thaliana
AT3G54860 0.5kb upstream 0.5kb upstream 500 false Chr3: 20329918-20330417 Arabidopsis thaliana
AT3G54860 0.5kb downstream 0.5kb downstream 6328 true Chr3: 20323590-20329917 Arabidopsis thaliana
AT3G54860 0.5kb downstream 0.5kb downstream 500 false Chr3: 20323590-20324089 Arabidopsis thaliana
AT3G54860 1.0kb upstream 1.0kb upstream 6828 true Chr3: 20324090-20330917 Arabidopsis thaliana
AT3G54860 1.0kb upstream 1.0kb upstream 1000 false Chr3: 20329918-20330917 Arabidopsis thaliana
AT3G54860 1.0kb downstream 1.0kb downstream 6828 true Chr3: 20323090-20329917 Arabidopsis thaliana
AT3G54860 1.0kb downstream 1.0kb downstream 1000 false Chr3: 20323090-20324089 Arabidopsis thaliana
AT3G54860 2.0kb upstream 2.0kb upstream 7828 true Chr3: 20324090-20331917 Arabidopsis thaliana
AT3G54860 2.0kb upstream 2.0kb upstream 2000 false Chr3: 20329918-20331917 Arabidopsis thaliana
AT3G54860 2.0kb downstream 2.0kb downstream 7828 true Chr3: 20322090-20329917 Arabidopsis thaliana
AT3G54860 2.0kb downstream 2.0kb downstream 2000 false Chr3: 20322090-20324089 Arabidopsis thaliana
AT3G54860 5.0kb upstream 5.0kb upstream 10828 true Chr3: 20324090-20334917 Arabidopsis thaliana
AT3G54860 5.0kb upstream 5.0kb upstream 5000 false Chr3: 20329918-20334917 Arabidopsis thaliana
AT3G54860 5.0kb downstream 5.0kb downstream 10828 true Chr3: 20319090-20329917 Arabidopsis thaliana
AT3G54860 5.0kb downstream 5.0kb downstream 5000 false Chr3: 20319090-20324089 Arabidopsis thaliana
AT3G54860 10.0kb upstream 10.0kb upstream 15828 true Chr3: 20324090-20339917 Arabidopsis thaliana
AT3G54860 10.0kb upstream 10.0kb upstream 10000 false Chr3: 20329918-20339917 Arabidopsis thaliana
AT3G54860 10.0kb downstream 10.0kb downstream 15828 true Chr3: 20314090-20329917 Arabidopsis thaliana
AT3G54860 10.0kb downstream 10.0kb downstream 10000 false Chr3: 20314090-20324089 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374150 5261 Brassicaceae View MSA
123828237 5264 Brassicales-Malvales View MSA
124337921 5266 SBM View MSA
124254654 5268 Malvidae View MSA
124060687 5270 Rosid View MSA
123752056 5271 Pentapetalae View MSA
122787734 5272 Eudicot View MSA
122044199 5273 Angiosperm View MSA
121343889 5274 Embryophyte View MSA
123428072 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.144        
cufflinks 3.352        
cufflinks 1.933        
cufflinks 3.32        
cufflinks 1.889       Low
cufflinks 3.738       High

0 Strain