Gene : VLN3 A. thaliana TAIR10
Primary Identifier:  ? AT3G57410 Defline:  (1 of 2) PTHR11977:SF46 - VILLIN-2-RELATED
Genomic Order:  4795 Name:  ? AT3G57410
Secondary Identifier:  ? PAC:19663864
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G57410 0.5kb upstream 0.5kb upstream 8465 true Chr3: 21243136-21251600 Arabidopsis thaliana
AT3G57410 0.5kb upstream 0.5kb upstream 500 false Chr3: 21251101-21251600 Arabidopsis thaliana
AT3G57410 0.5kb downstream 0.5kb downstream 8465 true Chr3: 21242636-21251100 Arabidopsis thaliana
AT3G57410 0.5kb downstream 0.5kb downstream 500 false Chr3: 21242636-21243135 Arabidopsis thaliana
AT3G57410 1.0kb upstream 1.0kb upstream 8965 true Chr3: 21243136-21252100 Arabidopsis thaliana
AT3G57410 1.0kb upstream 1.0kb upstream 1000 false Chr3: 21251101-21252100 Arabidopsis thaliana
AT3G57410 1.0kb downstream 1.0kb downstream 8965 true Chr3: 21242136-21251100 Arabidopsis thaliana
AT3G57410 1.0kb downstream 1.0kb downstream 1000 false Chr3: 21242136-21243135 Arabidopsis thaliana
AT3G57410 2.0kb upstream 2.0kb upstream 9965 true Chr3: 21243136-21253100 Arabidopsis thaliana
AT3G57410 2.0kb upstream 2.0kb upstream 2000 false Chr3: 21251101-21253100 Arabidopsis thaliana
AT3G57410 2.0kb downstream 2.0kb downstream 9965 true Chr3: 21241136-21251100 Arabidopsis thaliana
AT3G57410 2.0kb downstream 2.0kb downstream 2000 false Chr3: 21241136-21243135 Arabidopsis thaliana
AT3G57410 5.0kb upstream 5.0kb upstream 12965 true Chr3: 21243136-21256100 Arabidopsis thaliana
AT3G57410 5.0kb upstream 5.0kb upstream 5000 false Chr3: 21251101-21256100 Arabidopsis thaliana
AT3G57410 5.0kb downstream 5.0kb downstream 12965 true Chr3: 21238136-21251100 Arabidopsis thaliana
AT3G57410 5.0kb downstream 5.0kb downstream 5000 false Chr3: 21238136-21243135 Arabidopsis thaliana
AT3G57410 10.0kb upstream 10.0kb upstream 17965 true Chr3: 21243136-21261100 Arabidopsis thaliana
AT3G57410 10.0kb upstream 10.0kb upstream 10000 false Chr3: 21251101-21261100 Arabidopsis thaliana
AT3G57410 10.0kb downstream 10.0kb downstream 17965 true Chr3: 21233136-21251100 Arabidopsis thaliana
AT3G57410 10.0kb downstream 10.0kb downstream 10000 false Chr3: 21233136-21243135 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371204 5261 Brassicaceae View MSA
123835797 5264 Brassicales-Malvales View MSA
124336767 5266 SBM View MSA
124242323 5268 Malvidae View MSA
124073983 5270 Rosid View MSA
123746997 5271 Pentapetalae View MSA
122787653 5272 Eudicot View MSA
122045206 5273 Angiosperm View MSA
121349269 5274 Embryophyte View MSA
123428280 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.953        
cufflinks 16.539        
cufflinks 13.987       Low
cufflinks 20.347       High
cufflinks 14.441        
cufflinks 18.88        

0 Strain