Gene : AT3G15460 A. thaliana TAIR10
Defline:  (1 of 2) K14820 - ribosome biogenesis protein BRX1 (BRX1, BRIX1) Genomic Order:  1581
Name:  ? AT3G15460 Secondary Identifier:  ? PAC:19661473
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G15460 0.5kb upstream 0.5kb upstream 2678 true Chr3: 5214084-5216761 Arabidopsis thaliana
AT3G15460 0.5kb upstream 0.5kb upstream 500 false Chr3: 5216262-5216761 Arabidopsis thaliana
AT3G15460 0.5kb downstream 0.5kb downstream 2678 true Chr3: 5213584-5216261 Arabidopsis thaliana
AT3G15460 0.5kb downstream 0.5kb downstream 500 false Chr3: 5213584-5214083 Arabidopsis thaliana
AT3G15460 1.0kb upstream 1.0kb upstream 3178 true Chr3: 5214084-5217261 Arabidopsis thaliana
AT3G15460 1.0kb upstream 1.0kb upstream 1000 false Chr3: 5216262-5217261 Arabidopsis thaliana
AT3G15460 1.0kb downstream 1.0kb downstream 3178 true Chr3: 5213084-5216261 Arabidopsis thaliana
AT3G15460 1.0kb downstream 1.0kb downstream 1000 false Chr3: 5213084-5214083 Arabidopsis thaliana
AT3G15460 2.0kb upstream 2.0kb upstream 4178 true Chr3: 5214084-5218261 Arabidopsis thaliana
AT3G15460 2.0kb upstream 2.0kb upstream 2000 false Chr3: 5216262-5218261 Arabidopsis thaliana
AT3G15460 2.0kb downstream 2.0kb downstream 4178 true Chr3: 5212084-5216261 Arabidopsis thaliana
AT3G15460 2.0kb downstream 2.0kb downstream 2000 false Chr3: 5212084-5214083 Arabidopsis thaliana
AT3G15460 5.0kb upstream 5.0kb upstream 7178 true Chr3: 5214084-5221261 Arabidopsis thaliana
AT3G15460 5.0kb upstream 5.0kb upstream 5000 false Chr3: 5216262-5221261 Arabidopsis thaliana
AT3G15460 5.0kb downstream 5.0kb downstream 7178 true Chr3: 5209084-5216261 Arabidopsis thaliana
AT3G15460 5.0kb downstream 5.0kb downstream 5000 false Chr3: 5209084-5214083 Arabidopsis thaliana
AT3G15460 10.0kb upstream 10.0kb upstream 12178 true Chr3: 5214084-5226261 Arabidopsis thaliana
AT3G15460 10.0kb upstream 10.0kb upstream 10000 false Chr3: 5216262-5226261 Arabidopsis thaliana
AT3G15460 10.0kb downstream 10.0kb downstream 12178 true Chr3: 5204084-5216261 Arabidopsis thaliana
AT3G15460 10.0kb downstream 10.0kb downstream 10000 false Chr3: 5204084-5214083 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380176 5261 Brassicaceae View MSA
123834611 5264 Brassicales-Malvales View MSA
124343923 5266 SBM View MSA
124238393 5268 Malvidae View MSA
124066566 5270 Rosid View MSA
123743226 5271 Pentapetalae View MSA
122791953 5272 Eudicot View MSA
122044943 5273 Angiosperm View MSA
121349152 5274 Embryophyte View MSA
123424371 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.389        
cufflinks 7.067        
cufflinks 3.114        
cufflinks 7.311        
cufflinks 2.502       Low
cufflinks 8.813       High

0 Strain