Gene : AT3G22142 A. thaliana TAIR10
Defline:  (1 of 2) PTHR32093//PTHR32093:SF16 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23-RELATED Genomic Order:  2311
Name:  ? AT3G22142 Secondary Identifier:  ? PAC:19664795
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22142 0.5kb upstream 0.5kb upstream 4943 true Chr3: 7803604-7808546 Arabidopsis thaliana
AT3G22142 0.5kb upstream 0.5kb upstream 500 false Chr3: 7808047-7808546 Arabidopsis thaliana
AT3G22142 0.5kb downstream 0.5kb downstream 4943 true Chr3: 7803104-7808046 Arabidopsis thaliana
AT3G22142 0.5kb downstream 0.5kb downstream 500 false Chr3: 7803104-7803603 Arabidopsis thaliana
AT3G22142 1.0kb upstream 1.0kb upstream 5443 true Chr3: 7803604-7809046 Arabidopsis thaliana
AT3G22142 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7808047-7809046 Arabidopsis thaliana
AT3G22142 1.0kb downstream 1.0kb downstream 5443 true Chr3: 7802604-7808046 Arabidopsis thaliana
AT3G22142 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7802604-7803603 Arabidopsis thaliana
AT3G22142 2.0kb upstream 2.0kb upstream 6443 true Chr3: 7803604-7810046 Arabidopsis thaliana
AT3G22142 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7808047-7810046 Arabidopsis thaliana
AT3G22142 2.0kb downstream 2.0kb downstream 6443 true Chr3: 7801604-7808046 Arabidopsis thaliana
AT3G22142 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7801604-7803603 Arabidopsis thaliana
AT3G22142 5.0kb upstream 5.0kb upstream 9443 true Chr3: 7803604-7813046 Arabidopsis thaliana
AT3G22142 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7808047-7813046 Arabidopsis thaliana
AT3G22142 5.0kb downstream 5.0kb downstream 9443 true Chr3: 7798604-7808046 Arabidopsis thaliana
AT3G22142 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7798604-7803603 Arabidopsis thaliana
AT3G22142 10.0kb upstream 10.0kb upstream 14443 true Chr3: 7803604-7818046 Arabidopsis thaliana
AT3G22142 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7808047-7818046 Arabidopsis thaliana
AT3G22142 10.0kb downstream 10.0kb downstream 14443 true Chr3: 7793604-7808046 Arabidopsis thaliana
AT3G22142 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7793604-7803603 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494597 5273 Angiosperm Singleton cluster - no MSA
122330304 5261 Brassicaceae Singleton cluster - no MSA
123771560 5264 Brassicales-Malvales Singleton cluster - no MSA
124270088 5266 SBM Singleton cluster - no MSA
124126191 5268 Malvidae Singleton cluster - no MSA
123855121 5270 Rosid Singleton cluster - no MSA
123441116 5271 Pentapetalae Singleton cluster - no MSA
122476701 5272 Eudicot Singleton cluster - no MSA
120767966 5274 Embryophyte Singleton cluster - no MSA
122810357 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.265        
cufflinks 11.005        
cufflinks 13.782        
cufflinks 7.314        
cufflinks 8.639        
cufflinks 17.672       High

0 Strain