Gene : HYP1 A. thaliana TAIR10
Primary Identifier:  ? AT3G01100 Defline:  (1 of 1) PTHR13018//PTHR13018:SF32 - PROBABLE MEMBRANE PROTEIN DUF221-RELATED // SUBFAMILY NOT NAMED
Genomic Order:  12 Name:  ? AT3G01100
Secondary Identifier:  ? PAC:19662151
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G01100 0.5kb upstream 0.5kb upstream 4311 true Chr3: 34719-39029 Arabidopsis thaliana
AT3G01100 0.5kb upstream 0.5kb upstream 500 false Chr3: 38530-39029 Arabidopsis thaliana
AT3G01100 0.5kb downstream 0.5kb downstream 4311 true Chr3: 34219-38529 Arabidopsis thaliana
AT3G01100 0.5kb downstream 0.5kb downstream 500 false Chr3: 34219-34718 Arabidopsis thaliana
AT3G01100 1.0kb upstream 1.0kb upstream 4811 true Chr3: 34719-39529 Arabidopsis thaliana
AT3G01100 1.0kb upstream 1.0kb upstream 1000 false Chr3: 38530-39529 Arabidopsis thaliana
AT3G01100 1.0kb downstream 1.0kb downstream 4811 true Chr3: 33719-38529 Arabidopsis thaliana
AT3G01100 1.0kb downstream 1.0kb downstream 1000 false Chr3: 33719-34718 Arabidopsis thaliana
AT3G01100 2.0kb upstream 2.0kb upstream 5811 true Chr3: 34719-40529 Arabidopsis thaliana
AT3G01100 2.0kb upstream 2.0kb upstream 2000 false Chr3: 38530-40529 Arabidopsis thaliana
AT3G01100 2.0kb downstream 2.0kb downstream 5811 true Chr3: 32719-38529 Arabidopsis thaliana
AT3G01100 2.0kb downstream 2.0kb downstream 2000 false Chr3: 32719-34718 Arabidopsis thaliana
AT3G01100 5.0kb upstream 5.0kb upstream 8811 true Chr3: 34719-43529 Arabidopsis thaliana
AT3G01100 5.0kb upstream 5.0kb upstream 5000 false Chr3: 38530-43529 Arabidopsis thaliana
AT3G01100 5.0kb downstream 5.0kb downstream 8811 true Chr3: 29719-38529 Arabidopsis thaliana
AT3G01100 5.0kb downstream 5.0kb downstream 5000 false Chr3: 29719-34718 Arabidopsis thaliana
AT3G01100 10.0kb upstream 10.0kb upstream 13811 true Chr3: 34719-48529 Arabidopsis thaliana
AT3G01100 10.0kb upstream 10.0kb upstream 10000 false Chr3: 38530-48529 Arabidopsis thaliana
AT3G01100 10.0kb downstream 10.0kb downstream 13811 true Chr3: 24719-38529 Arabidopsis thaliana
AT3G01100 10.0kb downstream 10.0kb downstream 10000 false Chr3: 24719-34718 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367769 5261 Brassicaceae View MSA
123840825 5264 Brassicales-Malvales View MSA
124342911 5266 SBM View MSA
124249614 5268 Malvidae View MSA
124063440 5270 Rosid View MSA
123744982 5271 Pentapetalae View MSA
122786310 5272 Eudicot View MSA
122047251 5273 Angiosperm View MSA
123429118 5275 Viridiplantae View MSA
121349616 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.494       Low
cufflinks 7.417        
cufflinks 5.07        
cufflinks 8.23       High
cufflinks 5.74        
cufflinks 6.214        

0 Strain