Gene : LYC A. thaliana TAIR10
Primary Identifier:  ? AT3G10230 Defline:  (1 of 1) K06443 - lycopene beta-cyclase (lcyB, crtL1, crtY)
Genomic Order:  982 Name:  ? AT3G10230
Secondary Identifier:  ? PAC:19662671
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CAROTENOID-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5943 Arabidopsis thaliana pathologic  
Athaliana PWY-5947 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G10230 0.5kb upstream 0.5kb upstream 2464 true Chr3: 3164075-3166538 Arabidopsis thaliana
AT3G10230 0.5kb upstream 0.5kb upstream 500 false Chr3: 3166039-3166538 Arabidopsis thaliana
AT3G10230 0.5kb downstream 0.5kb downstream 2464 true Chr3: 3163575-3166038 Arabidopsis thaliana
AT3G10230 0.5kb downstream 0.5kb downstream 500 false Chr3: 3163575-3164074 Arabidopsis thaliana
AT3G10230 1.0kb upstream 1.0kb upstream 2964 true Chr3: 3164075-3167038 Arabidopsis thaliana
AT3G10230 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3166039-3167038 Arabidopsis thaliana
AT3G10230 1.0kb downstream 1.0kb downstream 2964 true Chr3: 3163075-3166038 Arabidopsis thaliana
AT3G10230 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3163075-3164074 Arabidopsis thaliana
AT3G10230 2.0kb upstream 2.0kb upstream 3964 true Chr3: 3164075-3168038 Arabidopsis thaliana
AT3G10230 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3166039-3168038 Arabidopsis thaliana
AT3G10230 2.0kb downstream 2.0kb downstream 3964 true Chr3: 3162075-3166038 Arabidopsis thaliana
AT3G10230 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3162075-3164074 Arabidopsis thaliana
AT3G10230 5.0kb upstream 5.0kb upstream 6964 true Chr3: 3164075-3171038 Arabidopsis thaliana
AT3G10230 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3166039-3171038 Arabidopsis thaliana
AT3G10230 5.0kb downstream 5.0kb downstream 6964 true Chr3: 3159075-3166038 Arabidopsis thaliana
AT3G10230 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3159075-3164074 Arabidopsis thaliana
AT3G10230 10.0kb upstream 10.0kb upstream 11964 true Chr3: 3164075-3176038 Arabidopsis thaliana
AT3G10230 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3166039-3176038 Arabidopsis thaliana
AT3G10230 10.0kb downstream 10.0kb downstream 11964 true Chr3: 3154075-3166038 Arabidopsis thaliana
AT3G10230 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3154075-3164074 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367824 5261 Brassicaceae View MSA
123832829 5264 Brassicales-Malvales View MSA
124345045 5266 SBM View MSA
124240984 5268 Malvidae View MSA
124065821 5270 Rosid View MSA
123737595 5271 Pentapetalae View MSA
122786885 5272 Eudicot View MSA
122046204 5273 Angiosperm View MSA
121345644 5274 Embryophyte View MSA
123423874 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.55        
cufflinks 6.092        
cufflinks 16.765       High
cufflinks 6.363        
cufflinks 15.891        
cufflinks 5.368       Low

0 Strain