Gene : AT5G62460 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23012//PTHR23012:SF96 - MEMBRANE ASSOCIATED RING FINGER // SUBFAMILY NOT NAMED Genomic Order:  5752
Name:  ? AT5G62460 Secondary Identifier:  ? PAC:19670023
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62460 0.5kb upstream 0.5kb upstream 2912 true Chr5: 25074383-25077294 Arabidopsis thaliana
AT5G62460 0.5kb upstream 0.5kb upstream 500 false Chr5: 25074383-25074882 Arabidopsis thaliana
AT5G62460 0.5kb downstream 0.5kb downstream 2912 true Chr5: 25074883-25077794 Arabidopsis thaliana
AT5G62460 0.5kb downstream 0.5kb downstream 500 false Chr5: 25077295-25077794 Arabidopsis thaliana
AT5G62460 1.0kb upstream 1.0kb upstream 3412 true Chr5: 25073883-25077294 Arabidopsis thaliana
AT5G62460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25073883-25074882 Arabidopsis thaliana
AT5G62460 1.0kb downstream 1.0kb downstream 3412 true Chr5: 25074883-25078294 Arabidopsis thaliana
AT5G62460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25077295-25078294 Arabidopsis thaliana
AT5G62460 2.0kb upstream 2.0kb upstream 4412 true Chr5: 25072883-25077294 Arabidopsis thaliana
AT5G62460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25072883-25074882 Arabidopsis thaliana
AT5G62460 2.0kb downstream 2.0kb downstream 4412 true Chr5: 25074883-25079294 Arabidopsis thaliana
AT5G62460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25077295-25079294 Arabidopsis thaliana
AT5G62460 5.0kb upstream 5.0kb upstream 7412 true Chr5: 25069883-25077294 Arabidopsis thaliana
AT5G62460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25069883-25074882 Arabidopsis thaliana
AT5G62460 5.0kb downstream 5.0kb downstream 7412 true Chr5: 25074883-25082294 Arabidopsis thaliana
AT5G62460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25077295-25082294 Arabidopsis thaliana
AT5G62460 10.0kb upstream 10.0kb upstream 12412 true Chr5: 25064883-25077294 Arabidopsis thaliana
AT5G62460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25064883-25074882 Arabidopsis thaliana
AT5G62460 10.0kb downstream 10.0kb downstream 12412 true Chr5: 25074883-25087294 Arabidopsis thaliana
AT5G62460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25077295-25087294 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373061 5261 Brassicaceae View MSA
123839450 5264 Brassicales-Malvales View MSA
124340031 5266 SBM View MSA
124251215 5268 Malvidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.809        
cufflinks 19.372       High
cufflinks 8.922       Low
cufflinks 15.998        
cufflinks 10.621        
cufflinks 18.462        

0 Strain