Gene : AT5G62950 A. thaliana TAIR10
Defline:  (1 of 2) PTHR15561//PTHR15561:SF0 - CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN // DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9 Genomic Order:  5804
Name:  ? AT5G62950 Secondary Identifier:  ? PAC:19669653
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G62950 0.5kb upstream 0.5kb upstream 2223 true Chr5: 25262179-25264401 Arabidopsis thaliana
AT5G62950 0.5kb upstream 0.5kb upstream 500 false Chr5: 25263902-25264401 Arabidopsis thaliana
AT5G62950 0.5kb downstream 0.5kb downstream 2223 true Chr5: 25261679-25263901 Arabidopsis thaliana
AT5G62950 0.5kb downstream 0.5kb downstream 500 false Chr5: 25261679-25262178 Arabidopsis thaliana
AT5G62950 1.0kb upstream 1.0kb upstream 2723 true Chr5: 25262179-25264901 Arabidopsis thaliana
AT5G62950 1.0kb upstream 1.0kb upstream 1000 false Chr5: 25263902-25264901 Arabidopsis thaliana
AT5G62950 1.0kb downstream 1.0kb downstream 2723 true Chr5: 25261179-25263901 Arabidopsis thaliana
AT5G62950 1.0kb downstream 1.0kb downstream 1000 false Chr5: 25261179-25262178 Arabidopsis thaliana
AT5G62950 2.0kb upstream 2.0kb upstream 3723 true Chr5: 25262179-25265901 Arabidopsis thaliana
AT5G62950 2.0kb upstream 2.0kb upstream 2000 false Chr5: 25263902-25265901 Arabidopsis thaliana
AT5G62950 2.0kb downstream 2.0kb downstream 3723 true Chr5: 25260179-25263901 Arabidopsis thaliana
AT5G62950 2.0kb downstream 2.0kb downstream 2000 false Chr5: 25260179-25262178 Arabidopsis thaliana
AT5G62950 5.0kb upstream 5.0kb upstream 6723 true Chr5: 25262179-25268901 Arabidopsis thaliana
AT5G62950 5.0kb upstream 5.0kb upstream 5000 false Chr5: 25263902-25268901 Arabidopsis thaliana
AT5G62950 5.0kb downstream 5.0kb downstream 6723 true Chr5: 25257179-25263901 Arabidopsis thaliana
AT5G62950 5.0kb downstream 5.0kb downstream 5000 false Chr5: 25257179-25262178 Arabidopsis thaliana
AT5G62950 10.0kb upstream 10.0kb upstream 11723 true Chr5: 25262179-25273901 Arabidopsis thaliana
AT5G62950 10.0kb upstream 10.0kb upstream 10000 false Chr5: 25263902-25273901 Arabidopsis thaliana
AT5G62950 10.0kb downstream 10.0kb downstream 11723 true Chr5: 25252179-25263901 Arabidopsis thaliana
AT5G62950 10.0kb downstream 10.0kb downstream 10000 false Chr5: 25252179-25262178 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380428 5261 Brassicaceae View MSA
123802711 5264 Brassicales-Malvales View MSA
124339362 5266 SBM View MSA
124241908 5268 Malvidae View MSA
124063506 5270 Rosid View MSA
123740278 5271 Pentapetalae View MSA
122796140 5272 Eudicot View MSA
122047210 5273 Angiosperm View MSA
121347420 5274 Embryophyte View MSA
123427400 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.156       Low
cufflinks 8.273       High
cufflinks 4.166        
cufflinks 7.518       High
cufflinks 3.773        
cufflinks 5.173        

0 Strain