Gene : AT5G57815 A. thaliana TAIR10
Defline:  (1 of 4) K02267 - cytochrome c oxidase subunit 6b (COX6B) Genomic Order:  5267
Name:  ? AT5G57815 Secondary Identifier:  ? PAC:19668856
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57815 0.5kb upstream 0.5kb upstream 1689 true Chr5: 23426168-23427856 Arabidopsis thaliana
AT5G57815 0.5kb upstream 0.5kb upstream 500 false Chr5: 23426168-23426667 Arabidopsis thaliana
AT5G57815 0.5kb downstream 0.5kb downstream 1689 true Chr5: 23426668-23428356 Arabidopsis thaliana
AT5G57815 0.5kb downstream 0.5kb downstream 500 false Chr5: 23427857-23428356 Arabidopsis thaliana
AT5G57815 1.0kb upstream 1.0kb upstream 2189 true Chr5: 23425668-23427856 Arabidopsis thaliana
AT5G57815 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23425668-23426667 Arabidopsis thaliana
AT5G57815 1.0kb downstream 1.0kb downstream 2189 true Chr5: 23426668-23428856 Arabidopsis thaliana
AT5G57815 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23427857-23428856 Arabidopsis thaliana
AT5G57815 2.0kb upstream 2.0kb upstream 3189 true Chr5: 23424668-23427856 Arabidopsis thaliana
AT5G57815 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23424668-23426667 Arabidopsis thaliana
AT5G57815 2.0kb downstream 2.0kb downstream 3189 true Chr5: 23426668-23429856 Arabidopsis thaliana
AT5G57815 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23427857-23429856 Arabidopsis thaliana
AT5G57815 5.0kb upstream 5.0kb upstream 6189 true Chr5: 23421668-23427856 Arabidopsis thaliana
AT5G57815 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23421668-23426667 Arabidopsis thaliana
AT5G57815 5.0kb downstream 5.0kb downstream 6189 true Chr5: 23426668-23432856 Arabidopsis thaliana
AT5G57815 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23427857-23432856 Arabidopsis thaliana
AT5G57815 10.0kb upstream 10.0kb upstream 11189 true Chr5: 23416668-23427856 Arabidopsis thaliana
AT5G57815 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23416668-23426667 Arabidopsis thaliana
AT5G57815 10.0kb downstream 10.0kb downstream 11189 true Chr5: 23426668-23437856 Arabidopsis thaliana
AT5G57815 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23427857-23437856 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378831 5261 Brassicaceae View MSA
123836054 5264 Brassicales-Malvales View MSA
124340076 5266 SBM View MSA
124241119 5268 Malvidae View MSA
124068898 5270 Rosid View MSA
123741112 5271 Pentapetalae View MSA
122785907 5272 Eudicot View MSA
122042170 5273 Angiosperm View MSA
121351047 5274 Embryophyte View MSA
123424784 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.59        
cufflinks 23.0        
cufflinks 28.347     High  
cufflinks 19.56       Low
cufflinks 28.576     High  
cufflinks 18.706       Low

0 Strain