Gene : AT5G58020 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12775 - PROTEIN C20ORF43 HOMOLOG Genomic Order:  5291
Name:  ? AT5G58020 Secondary Identifier:  ? PAC:19672050
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58020 0.5kb upstream 0.5kb upstream 1819 true Chr5: 23485000-23486818 Arabidopsis thaliana
AT5G58020 0.5kb upstream 0.5kb upstream 500 false Chr5: 23485000-23485499 Arabidopsis thaliana
AT5G58020 0.5kb downstream 0.5kb downstream 1819 true Chr5: 23485500-23487318 Arabidopsis thaliana
AT5G58020 0.5kb downstream 0.5kb downstream 500 false Chr5: 23486819-23487318 Arabidopsis thaliana
AT5G58020 1.0kb upstream 1.0kb upstream 2319 true Chr5: 23484500-23486818 Arabidopsis thaliana
AT5G58020 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23484500-23485499 Arabidopsis thaliana
AT5G58020 1.0kb downstream 1.0kb downstream 2319 true Chr5: 23485500-23487818 Arabidopsis thaliana
AT5G58020 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23486819-23487818 Arabidopsis thaliana
AT5G58020 2.0kb upstream 2.0kb upstream 3319 true Chr5: 23483500-23486818 Arabidopsis thaliana
AT5G58020 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23483500-23485499 Arabidopsis thaliana
AT5G58020 2.0kb downstream 2.0kb downstream 3319 true Chr5: 23485500-23488818 Arabidopsis thaliana
AT5G58020 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23486819-23488818 Arabidopsis thaliana
AT5G58020 5.0kb upstream 5.0kb upstream 6319 true Chr5: 23480500-23486818 Arabidopsis thaliana
AT5G58020 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23480500-23485499 Arabidopsis thaliana
AT5G58020 5.0kb downstream 5.0kb downstream 6319 true Chr5: 23485500-23491818 Arabidopsis thaliana
AT5G58020 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23486819-23491818 Arabidopsis thaliana
AT5G58020 10.0kb upstream 10.0kb upstream 11319 true Chr5: 23475500-23486818 Arabidopsis thaliana
AT5G58020 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23475500-23485499 Arabidopsis thaliana
AT5G58020 10.0kb downstream 10.0kb downstream 11319 true Chr5: 23485500-23496818 Arabidopsis thaliana
AT5G58020 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23486819-23496818 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362098 5261 Brassicaceae View MSA
123829755 5264 Brassicales-Malvales View MSA
124342417 5266 SBM View MSA
124243946 5268 Malvidae View MSA
124066786 5270 Rosid View MSA
123747269 5271 Pentapetalae View MSA
122787080 5272 Eudicot View MSA
122046209 5273 Angiosperm View MSA
121350063 5274 Embryophyte View MSA
123426844 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.145        
cufflinks 24.1       Low
cufflinks 29.468     High  
cufflinks 26.244        
cufflinks 31.802     High High
cufflinks 27.768        

0 Strain