Gene : RBP45A A. thaliana TAIR10
Primary Identifier:  ? AT5G54900 Defline:  (1 of 4) PTHR24012//PTHR24012:SF333 - FAMILY NOT NAMED // POLYADENYLATE-BINDING PROTEIN RBP45B-RELATED
Genomic Order:  4950 Name:  ? AT5G54900
Secondary Identifier:  ? PAC:19668948
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54900 0.5kb upstream 0.5kb upstream 3464 true Chr5: 22294883-22298346 Arabidopsis thaliana
AT5G54900 0.5kb upstream 0.5kb upstream 500 false Chr5: 22294883-22295382 Arabidopsis thaliana
AT5G54900 0.5kb downstream 0.5kb downstream 3464 true Chr5: 22295383-22298846 Arabidopsis thaliana
AT5G54900 0.5kb downstream 0.5kb downstream 500 false Chr5: 22298347-22298846 Arabidopsis thaliana
AT5G54900 1.0kb upstream 1.0kb upstream 3964 true Chr5: 22294383-22298346 Arabidopsis thaliana
AT5G54900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22294383-22295382 Arabidopsis thaliana
AT5G54900 1.0kb downstream 1.0kb downstream 3964 true Chr5: 22295383-22299346 Arabidopsis thaliana
AT5G54900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22298347-22299346 Arabidopsis thaliana
AT5G54900 2.0kb upstream 2.0kb upstream 4964 true Chr5: 22293383-22298346 Arabidopsis thaliana
AT5G54900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22293383-22295382 Arabidopsis thaliana
AT5G54900 2.0kb downstream 2.0kb downstream 4964 true Chr5: 22295383-22300346 Arabidopsis thaliana
AT5G54900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22298347-22300346 Arabidopsis thaliana
AT5G54900 5.0kb upstream 5.0kb upstream 7964 true Chr5: 22290383-22298346 Arabidopsis thaliana
AT5G54900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22290383-22295382 Arabidopsis thaliana
AT5G54900 5.0kb downstream 5.0kb downstream 7964 true Chr5: 22295383-22303346 Arabidopsis thaliana
AT5G54900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22298347-22303346 Arabidopsis thaliana
AT5G54900 10.0kb upstream 10.0kb upstream 12964 true Chr5: 22285383-22298346 Arabidopsis thaliana
AT5G54900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22285383-22295382 Arabidopsis thaliana
AT5G54900 10.0kb downstream 10.0kb downstream 12964 true Chr5: 22295383-22308346 Arabidopsis thaliana
AT5G54900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22298347-22308346 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360834 5261 Brassicaceae View MSA
123798039 5264 Brassicales-Malvales View MSA
124350861 5266 SBM View MSA
124242646 5268 Malvidae View MSA
124066893 5270 Rosid View MSA
123742056 5271 Pentapetalae View MSA
122786744 5272 Eudicot View MSA
122051452 5273 Angiosperm View MSA
121351371 5274 Embryophyte View MSA
123424048 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.483        
cufflinks 22.176        
cufflinks 14.696       Low
cufflinks 26.4        
cufflinks 16.155        
cufflinks 30.135     High High

0 Strain