Gene : TOP1ALPHA A. thaliana TAIR10
Primary Identifier:  ? AT5G55300 Defline:  (1 of 2) K03163 - DNA topoisomerase I [EC:5.99.1.2] (TOP1)
Genomic Order:  4994 Name:  ? AT5G55300
Secondary Identifier:  ? PAC:19671116
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55300 0.5kb upstream 0.5kb upstream 5426 true Chr5: 22424577-22430002 Arabidopsis thaliana
AT5G55300 0.5kb upstream 0.5kb upstream 500 false Chr5: 22429503-22430002 Arabidopsis thaliana
AT5G55300 0.5kb downstream 0.5kb downstream 5426 true Chr5: 22424077-22429502 Arabidopsis thaliana
AT5G55300 0.5kb downstream 0.5kb downstream 500 false Chr5: 22424077-22424576 Arabidopsis thaliana
AT5G55300 1.0kb upstream 1.0kb upstream 5926 true Chr5: 22424577-22430502 Arabidopsis thaliana
AT5G55300 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22429503-22430502 Arabidopsis thaliana
AT5G55300 1.0kb downstream 1.0kb downstream 5926 true Chr5: 22423577-22429502 Arabidopsis thaliana
AT5G55300 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22423577-22424576 Arabidopsis thaliana
AT5G55300 2.0kb upstream 2.0kb upstream 6926 true Chr5: 22424577-22431502 Arabidopsis thaliana
AT5G55300 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22429503-22431502 Arabidopsis thaliana
AT5G55300 2.0kb downstream 2.0kb downstream 6926 true Chr5: 22422577-22429502 Arabidopsis thaliana
AT5G55300 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22422577-22424576 Arabidopsis thaliana
AT5G55300 5.0kb upstream 5.0kb upstream 9926 true Chr5: 22424577-22434502 Arabidopsis thaliana
AT5G55300 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22429503-22434502 Arabidopsis thaliana
AT5G55300 5.0kb downstream 5.0kb downstream 9926 true Chr5: 22419577-22429502 Arabidopsis thaliana
AT5G55300 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22419577-22424576 Arabidopsis thaliana
AT5G55300 10.0kb upstream 10.0kb upstream 14926 true Chr5: 22424577-22439502 Arabidopsis thaliana
AT5G55300 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22429503-22439502 Arabidopsis thaliana
AT5G55300 10.0kb downstream 10.0kb downstream 14926 true Chr5: 22414577-22429502 Arabidopsis thaliana
AT5G55300 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22414577-22424576 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362633 5261 Brassicaceae View MSA
123838177 5264 Brassicales-Malvales View MSA
124345906 5266 SBM View MSA
124237608 5268 Malvidae View MSA
124069398 5270 Rosid View MSA
123742163 5271 Pentapetalae View MSA
122793496 5272 Eudicot View MSA
122043821 5273 Angiosperm View MSA
121346629 5274 Embryophyte View MSA
123428492 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.301        
cufflinks 6.33        
cufflinks 3.867       Low
cufflinks 6.848       High
cufflinks 3.971       Low
cufflinks 5.879        

0 Strain