Gene : AT5G55720 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31683:SF33 - PECTATE LYASE 21-RELATED Genomic Order:  5038
Name:  ? AT5G55720 Secondary Identifier:  ? PAC:19666372
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55720 0.5kb upstream 0.5kb upstream 2179 true Chr5: 22555547-22557725 Arabidopsis thaliana
AT5G55720 0.5kb upstream 0.5kb upstream 500 false Chr5: 22555547-22556046 Arabidopsis thaliana
AT5G55720 0.5kb downstream 0.5kb downstream 2179 true Chr5: 22556047-22558225 Arabidopsis thaliana
AT5G55720 0.5kb downstream 0.5kb downstream 500 false Chr5: 22557726-22558225 Arabidopsis thaliana
AT5G55720 1.0kb upstream 1.0kb upstream 2679 true Chr5: 22555047-22557725 Arabidopsis thaliana
AT5G55720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22555047-22556046 Arabidopsis thaliana
AT5G55720 1.0kb downstream 1.0kb downstream 2679 true Chr5: 22556047-22558725 Arabidopsis thaliana
AT5G55720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22557726-22558725 Arabidopsis thaliana
AT5G55720 2.0kb upstream 2.0kb upstream 3679 true Chr5: 22554047-22557725 Arabidopsis thaliana
AT5G55720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22554047-22556046 Arabidopsis thaliana
AT5G55720 2.0kb downstream 2.0kb downstream 3679 true Chr5: 22556047-22559725 Arabidopsis thaliana
AT5G55720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22557726-22559725 Arabidopsis thaliana
AT5G55720 5.0kb upstream 5.0kb upstream 6679 true Chr5: 22551047-22557725 Arabidopsis thaliana
AT5G55720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22551047-22556046 Arabidopsis thaliana
AT5G55720 5.0kb downstream 5.0kb downstream 6679 true Chr5: 22556047-22562725 Arabidopsis thaliana
AT5G55720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22557726-22562725 Arabidopsis thaliana
AT5G55720 10.0kb upstream 10.0kb upstream 11679 true Chr5: 22546047-22557725 Arabidopsis thaliana
AT5G55720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22546047-22556046 Arabidopsis thaliana
AT5G55720 10.0kb downstream 10.0kb downstream 11679 true Chr5: 22556047-22567725 Arabidopsis thaliana
AT5G55720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22557726-22567725 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510614 5273 Angiosperm View MSA
122366124 5261 Brassicaceae View MSA
123799117 5264 Brassicales-Malvales View MSA
124296668 5266 SBM View MSA
124148752 5268 Malvidae View MSA
123874689 5270 Rosid View MSA
123458621 5271 Pentapetalae View MSA
122494023 5272 Eudicot View MSA
120783706 5274 Embryophyte View MSA
122825683 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.684       High
cufflinks 0.081     Low  
cufflinks 0.671        
cufflinks 0.065     Low  
cufflinks 1.048        
cufflinks 0.058     Low  

0 Strain