Gene : AT5G55960 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21716 - TRANSMEMBRANE PROTEIN Genomic Order:  5065
Name:  ? AT5G55960 Secondary Identifier:  ? PAC:19669993
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55960 0.5kb upstream 0.5kb upstream 3012 true Chr5: 22662076-22665087 Arabidopsis thaliana
AT5G55960 0.5kb upstream 0.5kb upstream 500 false Chr5: 22662076-22662575 Arabidopsis thaliana
AT5G55960 0.5kb downstream 0.5kb downstream 3012 true Chr5: 22662576-22665587 Arabidopsis thaliana
AT5G55960 0.5kb downstream 0.5kb downstream 500 false Chr5: 22665088-22665587 Arabidopsis thaliana
AT5G55960 1.0kb upstream 1.0kb upstream 3512 true Chr5: 22661576-22665087 Arabidopsis thaliana
AT5G55960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22661576-22662575 Arabidopsis thaliana
AT5G55960 1.0kb downstream 1.0kb downstream 3512 true Chr5: 22662576-22666087 Arabidopsis thaliana
AT5G55960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22665088-22666087 Arabidopsis thaliana
AT5G55960 2.0kb upstream 2.0kb upstream 4512 true Chr5: 22660576-22665087 Arabidopsis thaliana
AT5G55960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22660576-22662575 Arabidopsis thaliana
AT5G55960 2.0kb downstream 2.0kb downstream 4512 true Chr5: 22662576-22667087 Arabidopsis thaliana
AT5G55960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22665088-22667087 Arabidopsis thaliana
AT5G55960 5.0kb upstream 5.0kb upstream 7512 true Chr5: 22657576-22665087 Arabidopsis thaliana
AT5G55960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22657576-22662575 Arabidopsis thaliana
AT5G55960 5.0kb downstream 5.0kb downstream 7512 true Chr5: 22662576-22670087 Arabidopsis thaliana
AT5G55960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22665088-22670087 Arabidopsis thaliana
AT5G55960 10.0kb upstream 10.0kb upstream 12512 true Chr5: 22652576-22665087 Arabidopsis thaliana
AT5G55960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22652576-22662575 Arabidopsis thaliana
AT5G55960 10.0kb downstream 10.0kb downstream 12512 true Chr5: 22662576-22675087 Arabidopsis thaliana
AT5G55960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22665088-22675087 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374927 5261 Brassicaceae View MSA
123829339 5264 Brassicales-Malvales View MSA
124341716 5266 SBM View MSA
124239051 5268 Malvidae View MSA
124073302 5270 Rosid View MSA
123750556 5271 Pentapetalae View MSA
122792038 5272 Eudicot View MSA
122049890 5273 Angiosperm View MSA
121348658 5274 Embryophyte View MSA
123426031 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.517        
cufflinks 28.447        
cufflinks 14.504        
cufflinks 27.175        
cufflinks 10.925       Low
cufflinks 31.784     High  

0 Strain