Gene : AT5G55980 A. thaliana TAIR10
Defline:  serine-rich protein-related Genomic Order:  5067
Name:  ? AT5G55980 Secondary Identifier:  ? PAC:19671493
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55980 0.5kb upstream 0.5kb upstream 842 true Chr5: 22669801-22670642 Arabidopsis thaliana
AT5G55980 0.5kb upstream 0.5kb upstream 500 false Chr5: 22669801-22670300 Arabidopsis thaliana
AT5G55980 0.5kb downstream 0.5kb downstream 842 true Chr5: 22670301-22671142 Arabidopsis thaliana
AT5G55980 0.5kb downstream 0.5kb downstream 500 false Chr5: 22670643-22671142 Arabidopsis thaliana
AT5G55980 1.0kb upstream 1.0kb upstream 1342 true Chr5: 22669301-22670642 Arabidopsis thaliana
AT5G55980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22669301-22670300 Arabidopsis thaliana
AT5G55980 1.0kb downstream 1.0kb downstream 1342 true Chr5: 22670301-22671642 Arabidopsis thaliana
AT5G55980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22670643-22671642 Arabidopsis thaliana
AT5G55980 2.0kb upstream 2.0kb upstream 2342 true Chr5: 22668301-22670642 Arabidopsis thaliana
AT5G55980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22668301-22670300 Arabidopsis thaliana
AT5G55980 2.0kb downstream 2.0kb downstream 2342 true Chr5: 22670301-22672642 Arabidopsis thaliana
AT5G55980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22670643-22672642 Arabidopsis thaliana
AT5G55980 5.0kb upstream 5.0kb upstream 5342 true Chr5: 22665301-22670642 Arabidopsis thaliana
AT5G55980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22665301-22670300 Arabidopsis thaliana
AT5G55980 5.0kb downstream 5.0kb downstream 5342 true Chr5: 22670301-22675642 Arabidopsis thaliana
AT5G55980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22670643-22675642 Arabidopsis thaliana
AT5G55980 10.0kb upstream 10.0kb upstream 10342 true Chr5: 22660301-22670642 Arabidopsis thaliana
AT5G55980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22660301-22670300 Arabidopsis thaliana
AT5G55980 10.0kb downstream 10.0kb downstream 10342 true Chr5: 22670301-22680642 Arabidopsis thaliana
AT5G55980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22670643-22680642 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375497 5261 Brassicaceae View MSA
123841393 5264 Brassicales-Malvales View MSA
124322917 5266 SBM View MSA
124244502 5268 Malvidae View MSA
124070281 5270 Rosid View MSA
123751970 5271 Pentapetalae View MSA
122796079 5272 Eudicot View MSA
122050175 5273 Angiosperm View MSA
121348989 5274 Embryophyte View MSA
123381114 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.044     Low Low
cufflinks 0.353        
cufflinks 0.049     Low Low
cufflinks 0.359     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.27     Low  

0 Strain