Gene : SPDS3 A. thaliana TAIR10
Primary Identifier:  ? AT5G53120 Defline:  (1 of 1) 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase
Genomic Order:  4752 Name:  ? AT5G53120
Secondary Identifier:  ? PAC:19666375
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ARGSPECAT-PWY Arabidopsis thaliana pathologic  
Athaliana BSUBPOLYAMSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-7528 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53120 0.5kb upstream 0.5kb upstream 3844 true Chr5: 21533973-21537816 Arabidopsis thaliana
AT5G53120 0.5kb upstream 0.5kb upstream 500 false Chr5: 21533973-21534472 Arabidopsis thaliana
AT5G53120 0.5kb downstream 0.5kb downstream 3844 true Chr5: 21534473-21538316 Arabidopsis thaliana
AT5G53120 0.5kb downstream 0.5kb downstream 500 false Chr5: 21537817-21538316 Arabidopsis thaliana
AT5G53120 1.0kb upstream 1.0kb upstream 4344 true Chr5: 21533473-21537816 Arabidopsis thaliana
AT5G53120 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21533473-21534472 Arabidopsis thaliana
AT5G53120 1.0kb downstream 1.0kb downstream 4344 true Chr5: 21534473-21538816 Arabidopsis thaliana
AT5G53120 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21537817-21538816 Arabidopsis thaliana
AT5G53120 2.0kb upstream 2.0kb upstream 5344 true Chr5: 21532473-21537816 Arabidopsis thaliana
AT5G53120 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21532473-21534472 Arabidopsis thaliana
AT5G53120 2.0kb downstream 2.0kb downstream 5344 true Chr5: 21534473-21539816 Arabidopsis thaliana
AT5G53120 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21537817-21539816 Arabidopsis thaliana
AT5G53120 5.0kb upstream 5.0kb upstream 8344 true Chr5: 21529473-21537816 Arabidopsis thaliana
AT5G53120 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21529473-21534472 Arabidopsis thaliana
AT5G53120 5.0kb downstream 5.0kb downstream 8344 true Chr5: 21534473-21542816 Arabidopsis thaliana
AT5G53120 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21537817-21542816 Arabidopsis thaliana
AT5G53120 10.0kb upstream 10.0kb upstream 13344 true Chr5: 21524473-21537816 Arabidopsis thaliana
AT5G53120 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21524473-21534472 Arabidopsis thaliana
AT5G53120 10.0kb downstream 10.0kb downstream 13344 true Chr5: 21534473-21547816 Arabidopsis thaliana
AT5G53120 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21537817-21547816 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374357 5261 Brassicaceae View MSA
123829244 5264 Brassicales-Malvales View MSA
124341220 5266 SBM View MSA
124251479 5268 Malvidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.07        
cufflinks 4.206        
cufflinks 1.585       Low
cufflinks 5.845       High
cufflinks 3.496        
cufflinks 4.17        

0 Strain