Gene : CRF3 A. thaliana TAIR10
Primary Identifier:  ? AT5G53290 Defline:  (1 of 8) PTHR31194//PTHR31194:SF0 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR // ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF3-RELATED
Genomic Order:  4771 Name:  ? AT5G53290
Secondary Identifier:  ? PAC:19667175
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53290 0.5kb upstream 0.5kb upstream 1955 true Chr5: 21617813-21619767 Arabidopsis thaliana
AT5G53290 0.5kb upstream 0.5kb upstream 500 false Chr5: 21619268-21619767 Arabidopsis thaliana
AT5G53290 0.5kb downstream 0.5kb downstream 1955 true Chr5: 21617313-21619267 Arabidopsis thaliana
AT5G53290 0.5kb downstream 0.5kb downstream 500 false Chr5: 21617313-21617812 Arabidopsis thaliana
AT5G53290 1.0kb upstream 1.0kb upstream 2455 true Chr5: 21617813-21620267 Arabidopsis thaliana
AT5G53290 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21619268-21620267 Arabidopsis thaliana
AT5G53290 1.0kb downstream 1.0kb downstream 2455 true Chr5: 21616813-21619267 Arabidopsis thaliana
AT5G53290 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21616813-21617812 Arabidopsis thaliana
AT5G53290 2.0kb upstream 2.0kb upstream 3455 true Chr5: 21617813-21621267 Arabidopsis thaliana
AT5G53290 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21619268-21621267 Arabidopsis thaliana
AT5G53290 2.0kb downstream 2.0kb downstream 3455 true Chr5: 21615813-21619267 Arabidopsis thaliana
AT5G53290 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21615813-21617812 Arabidopsis thaliana
AT5G53290 5.0kb upstream 5.0kb upstream 6455 true Chr5: 21617813-21624267 Arabidopsis thaliana
AT5G53290 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21619268-21624267 Arabidopsis thaliana
AT5G53290 5.0kb downstream 5.0kb downstream 6455 true Chr5: 21612813-21619267 Arabidopsis thaliana
AT5G53290 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21612813-21617812 Arabidopsis thaliana
AT5G53290 10.0kb upstream 10.0kb upstream 11455 true Chr5: 21617813-21629267 Arabidopsis thaliana
AT5G53290 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21619268-21629267 Arabidopsis thaliana
AT5G53290 10.0kb downstream 10.0kb downstream 11455 true Chr5: 21607813-21619267 Arabidopsis thaliana
AT5G53290 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21607813-21617812 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371071 5261 Brassicaceae View MSA
123838612 5264 Brassicales-Malvales View MSA
124339281 5266 SBM View MSA
124251372 5268 Malvidae View MSA
124071112 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.934        
cufflinks 9.906        
cufflinks 0.996        
cufflinks 12.617        
cufflinks 0.867        
cufflinks 14.852       High

0 Strain