Gene : MEF1 A. thaliana TAIR10
Primary Identifier:  ? AT5G52630 Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)
Genomic Order:  4698 Name:  ? AT5G52630
Secondary Identifier:  ? PAC:19665667
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52630 0.5kb upstream 0.5kb upstream 2267 true Chr5: 21349875-21352141 Arabidopsis thaliana
AT5G52630 0.5kb upstream 0.5kb upstream 500 false Chr5: 21349875-21350374 Arabidopsis thaliana
AT5G52630 0.5kb downstream 0.5kb downstream 2267 true Chr5: 21350375-21352641 Arabidopsis thaliana
AT5G52630 0.5kb downstream 0.5kb downstream 500 false Chr5: 21352142-21352641 Arabidopsis thaliana
AT5G52630 1.0kb upstream 1.0kb upstream 2767 true Chr5: 21349375-21352141 Arabidopsis thaliana
AT5G52630 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21349375-21350374 Arabidopsis thaliana
AT5G52630 1.0kb downstream 1.0kb downstream 2767 true Chr5: 21350375-21353141 Arabidopsis thaliana
AT5G52630 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21352142-21353141 Arabidopsis thaliana
AT5G52630 2.0kb upstream 2.0kb upstream 3767 true Chr5: 21348375-21352141 Arabidopsis thaliana
AT5G52630 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21348375-21350374 Arabidopsis thaliana
AT5G52630 2.0kb downstream 2.0kb downstream 3767 true Chr5: 21350375-21354141 Arabidopsis thaliana
AT5G52630 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21352142-21354141 Arabidopsis thaliana
AT5G52630 5.0kb upstream 5.0kb upstream 6767 true Chr5: 21345375-21352141 Arabidopsis thaliana
AT5G52630 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21345375-21350374 Arabidopsis thaliana
AT5G52630 5.0kb downstream 5.0kb downstream 6767 true Chr5: 21350375-21357141 Arabidopsis thaliana
AT5G52630 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21352142-21357141 Arabidopsis thaliana
AT5G52630 10.0kb upstream 10.0kb upstream 11767 true Chr5: 21340375-21352141 Arabidopsis thaliana
AT5G52630 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21340375-21350374 Arabidopsis thaliana
AT5G52630 10.0kb downstream 10.0kb downstream 11767 true Chr5: 21350375-21362141 Arabidopsis thaliana
AT5G52630 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21352142-21362141 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372058 5261 Brassicaceae View MSA
123831060 5264 Brassicales-Malvales View MSA
124341624 5266 SBM View MSA
124252420 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.005       High
cufflinks 2.204        
cufflinks 2.235        
cufflinks 2.416        
cufflinks 2.269        
cufflinks 2.091        

0 Strain