Gene : AT5G49555 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10668//PTHR10668:SF83 - PHYTOENE DEHYDROGENASE // PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2 Genomic Order:  4369
Name:  ? AT5G49555 Secondary Identifier:  ? PAC:19668247
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49555 0.5kb upstream 0.5kb upstream 3908 true Chr5: 20107229-20111136 Arabidopsis thaliana
AT5G49555 0.5kb upstream 0.5kb upstream 500 false Chr5: 20110637-20111136 Arabidopsis thaliana
AT5G49555 0.5kb downstream 0.5kb downstream 3908 true Chr5: 20106729-20110636 Arabidopsis thaliana
AT5G49555 0.5kb downstream 0.5kb downstream 500 false Chr5: 20106729-20107228 Arabidopsis thaliana
AT5G49555 1.0kb upstream 1.0kb upstream 4408 true Chr5: 20107229-20111636 Arabidopsis thaliana
AT5G49555 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20110637-20111636 Arabidopsis thaliana
AT5G49555 1.0kb downstream 1.0kb downstream 4408 true Chr5: 20106229-20110636 Arabidopsis thaliana
AT5G49555 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20106229-20107228 Arabidopsis thaliana
AT5G49555 2.0kb upstream 2.0kb upstream 5408 true Chr5: 20107229-20112636 Arabidopsis thaliana
AT5G49555 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20110637-20112636 Arabidopsis thaliana
AT5G49555 2.0kb downstream 2.0kb downstream 5408 true Chr5: 20105229-20110636 Arabidopsis thaliana
AT5G49555 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20105229-20107228 Arabidopsis thaliana
AT5G49555 5.0kb upstream 5.0kb upstream 8408 true Chr5: 20107229-20115636 Arabidopsis thaliana
AT5G49555 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20110637-20115636 Arabidopsis thaliana
AT5G49555 5.0kb downstream 5.0kb downstream 8408 true Chr5: 20102229-20110636 Arabidopsis thaliana
AT5G49555 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20102229-20107228 Arabidopsis thaliana
AT5G49555 10.0kb upstream 10.0kb upstream 13408 true Chr5: 20107229-20120636 Arabidopsis thaliana
AT5G49555 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20110637-20120636 Arabidopsis thaliana
AT5G49555 10.0kb downstream 10.0kb downstream 13408 true Chr5: 20097229-20110636 Arabidopsis thaliana
AT5G49555 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20097229-20107228 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364524 5261 Brassicaceae View MSA
123834443 5264 Brassicales-Malvales View MSA
124341130 5266 SBM View MSA
124243064 5268 Malvidae View MSA
124065962 5270 Rosid View MSA
123745918 5271 Pentapetalae View MSA
122796852 5272 Eudicot View MSA
122043092 5273 Angiosperm View MSA
121344165 5274 Embryophyte View MSA
123379989 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.576        
cufflinks 13.107        
cufflinks 9.07       Low
cufflinks 13.135        
cufflinks 11.047        
cufflinks 12.493        

0 Strain