Gene : MSP2 A. thaliana TAIR10
Primary Identifier:  ? AT5G46795 Defline:  (1 of 1) PTHR34190//PTHR34190:SF3 - FAMILY NOT NAMED // MICROSPORE-SPECIFIC PROMOTER 2
Genomic Order:  4062 Name:  ? AT5G46795
Secondary Identifier:  ? PAC:19671822
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G46795 0.5kb upstream 0.5kb upstream 1710 true Chr5: 18986988-18988697 Arabidopsis thaliana
AT5G46795 0.5kb upstream 0.5kb upstream 500 false Chr5: 18988198-18988697 Arabidopsis thaliana
AT5G46795 0.5kb downstream 0.5kb downstream 1710 true Chr5: 18986488-18988197 Arabidopsis thaliana
AT5G46795 0.5kb downstream 0.5kb downstream 500 false Chr5: 18986488-18986987 Arabidopsis thaliana
AT5G46795 1.0kb upstream 1.0kb upstream 2210 true Chr5: 18986988-18989197 Arabidopsis thaliana
AT5G46795 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18988198-18989197 Arabidopsis thaliana
AT5G46795 1.0kb downstream 1.0kb downstream 2210 true Chr5: 18985988-18988197 Arabidopsis thaliana
AT5G46795 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18985988-18986987 Arabidopsis thaliana
AT5G46795 2.0kb upstream 2.0kb upstream 3210 true Chr5: 18986988-18990197 Arabidopsis thaliana
AT5G46795 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18988198-18990197 Arabidopsis thaliana
AT5G46795 2.0kb downstream 2.0kb downstream 3210 true Chr5: 18984988-18988197 Arabidopsis thaliana
AT5G46795 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18984988-18986987 Arabidopsis thaliana
AT5G46795 5.0kb upstream 5.0kb upstream 6210 true Chr5: 18986988-18993197 Arabidopsis thaliana
AT5G46795 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18988198-18993197 Arabidopsis thaliana
AT5G46795 5.0kb downstream 5.0kb downstream 6210 true Chr5: 18981988-18988197 Arabidopsis thaliana
AT5G46795 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18981988-18986987 Arabidopsis thaliana
AT5G46795 10.0kb upstream 10.0kb upstream 11210 true Chr5: 18986988-18998197 Arabidopsis thaliana
AT5G46795 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18988198-18998197 Arabidopsis thaliana
AT5G46795 10.0kb downstream 10.0kb downstream 11210 true Chr5: 18976988-18988197 Arabidopsis thaliana
AT5G46795 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18976988-18986987 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791974 5273 Angiosperm View MSA
122366672 5261 Brassicaceae View MSA
123829034 5264 Brassicales-Malvales View MSA
124339219 5266 SBM View MSA
124243581 5268 Malvidae View MSA
124068285 5270 Rosid View MSA
123748958 5271 Pentapetalae View MSA
122795694 5272 Eudicot View MSA
121063238 5274 Embryophyte View MSA
123103002 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.037     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain