Gene : SAG12 A. thaliana TAIR10
Primary Identifier:  ? AT5G45890 Defline:  (1 of 1) PTHR12411//PTHR12411:SF297 - CYSTEINE PROTEASE FAMILY C1-RELATED // CYSTEINE PROTEASE
Genomic Order:  3967 Name:  ? AT5G45890
Secondary Identifier:  ? PAC:19671160
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G45890 0.5kb upstream 0.5kb upstream 2172 true Chr5: 18612759-18614930 Arabidopsis thaliana
AT5G45890 0.5kb upstream 0.5kb upstream 500 false Chr5: 18612759-18613258 Arabidopsis thaliana
AT5G45890 0.5kb downstream 0.5kb downstream 2172 true Chr5: 18613259-18615430 Arabidopsis thaliana
AT5G45890 0.5kb downstream 0.5kb downstream 500 false Chr5: 18614931-18615430 Arabidopsis thaliana
AT5G45890 1.0kb upstream 1.0kb upstream 2672 true Chr5: 18612259-18614930 Arabidopsis thaliana
AT5G45890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 18612259-18613258 Arabidopsis thaliana
AT5G45890 1.0kb downstream 1.0kb downstream 2672 true Chr5: 18613259-18615930 Arabidopsis thaliana
AT5G45890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 18614931-18615930 Arabidopsis thaliana
AT5G45890 2.0kb upstream 2.0kb upstream 3672 true Chr5: 18611259-18614930 Arabidopsis thaliana
AT5G45890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 18611259-18613258 Arabidopsis thaliana
AT5G45890 2.0kb downstream 2.0kb downstream 3672 true Chr5: 18613259-18616930 Arabidopsis thaliana
AT5G45890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 18614931-18616930 Arabidopsis thaliana
AT5G45890 5.0kb upstream 5.0kb upstream 6672 true Chr5: 18608259-18614930 Arabidopsis thaliana
AT5G45890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 18608259-18613258 Arabidopsis thaliana
AT5G45890 5.0kb downstream 5.0kb downstream 6672 true Chr5: 18613259-18619930 Arabidopsis thaliana
AT5G45890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 18614931-18619930 Arabidopsis thaliana
AT5G45890 10.0kb upstream 10.0kb upstream 11672 true Chr5: 18603259-18614930 Arabidopsis thaliana
AT5G45890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 18603259-18613258 Arabidopsis thaliana
AT5G45890 10.0kb downstream 10.0kb downstream 11672 true Chr5: 18613259-18624930 Arabidopsis thaliana
AT5G45890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 18614931-18624930 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369375 5261 Brassicaceae View MSA
123836594 5264 Brassicales-Malvales View MSA
124348430 5266 SBM View MSA
124254446 5268 Malvidae View MSA
124074647 5270 Rosid View MSA
123752467 5271 Pentapetalae View MSA
122797682 5272 Eudicot View MSA
122051193 5273 Angiosperm View MSA
121348840 5274 Embryophyte View MSA
123426788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.462        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.521        
cufflinks 0.965       Low
cufflinks 6.89       High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain