Gene : AT5G43330 A. thaliana TAIR10
Defline:  (1 of 3) K00025 - malate dehydrogenase (MDH1) Genomic Order:  3679
Name:  ? AT5G43330 Secondary Identifier:  ? PAC:19669871
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7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G43330 0.5kb upstream 0.5kb upstream 2713 true Chr5: 17389933-17392645 Arabidopsis thaliana
AT5G43330 0.5kb upstream 0.5kb upstream 500 false Chr5: 17389933-17390432 Arabidopsis thaliana
AT5G43330 0.5kb downstream 0.5kb downstream 2713 true Chr5: 17390433-17393145 Arabidopsis thaliana
AT5G43330 0.5kb downstream 0.5kb downstream 500 false Chr5: 17392646-17393145 Arabidopsis thaliana
AT5G43330 1.0kb upstream 1.0kb upstream 3213 true Chr5: 17389433-17392645 Arabidopsis thaliana
AT5G43330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17389433-17390432 Arabidopsis thaliana
AT5G43330 1.0kb downstream 1.0kb downstream 3213 true Chr5: 17390433-17393645 Arabidopsis thaliana
AT5G43330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17392646-17393645 Arabidopsis thaliana
AT5G43330 2.0kb upstream 2.0kb upstream 4213 true Chr5: 17388433-17392645 Arabidopsis thaliana
AT5G43330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17388433-17390432 Arabidopsis thaliana
AT5G43330 2.0kb downstream 2.0kb downstream 4213 true Chr5: 17390433-17394645 Arabidopsis thaliana
AT5G43330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17392646-17394645 Arabidopsis thaliana
AT5G43330 5.0kb upstream 5.0kb upstream 7213 true Chr5: 17385433-17392645 Arabidopsis thaliana
AT5G43330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17385433-17390432 Arabidopsis thaliana
AT5G43330 5.0kb downstream 5.0kb downstream 7213 true Chr5: 17390433-17397645 Arabidopsis thaliana
AT5G43330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17392646-17397645 Arabidopsis thaliana
AT5G43330 10.0kb upstream 10.0kb upstream 12213 true Chr5: 17380433-17392645 Arabidopsis thaliana
AT5G43330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17380433-17390432 Arabidopsis thaliana
AT5G43330 10.0kb downstream 10.0kb downstream 12213 true Chr5: 17390433-17402645 Arabidopsis thaliana
AT5G43330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17392646-17402645 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379151 5261 Brassicaceae View MSA
123832560 5264 Brassicales-Malvales View MSA
124339900 5266 SBM View MSA
124244988 5268 Malvidae View MSA
124064013 5270 Rosid View MSA
123739138 5271 Pentapetalae View MSA
122789281 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.542        
cufflinks 7.235        
cufflinks 9.416        
cufflinks 7.962        
cufflinks 11.279       High
cufflinks 4.885       Low

0 Strain