Gene : AT5G42330 A. thaliana TAIR10
Genomic Order:  3561 Name:  ? AT5G42330
Secondary Identifier:  ? PAC:19669356
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42330 0.5kb upstream 0.5kb upstream 1396 true Chr5: 16926108-16927503 Arabidopsis thaliana
AT5G42330 0.5kb upstream 0.5kb upstream 500 false Chr5: 16926108-16926607 Arabidopsis thaliana
AT5G42330 0.5kb downstream 0.5kb downstream 1396 true Chr5: 16926608-16928003 Arabidopsis thaliana
AT5G42330 0.5kb downstream 0.5kb downstream 500 false Chr5: 16927504-16928003 Arabidopsis thaliana
AT5G42330 1.0kb upstream 1.0kb upstream 1896 true Chr5: 16925608-16927503 Arabidopsis thaliana
AT5G42330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 16925608-16926607 Arabidopsis thaliana
AT5G42330 1.0kb downstream 1.0kb downstream 1896 true Chr5: 16926608-16928503 Arabidopsis thaliana
AT5G42330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 16927504-16928503 Arabidopsis thaliana
AT5G42330 2.0kb upstream 2.0kb upstream 2896 true Chr5: 16924608-16927503 Arabidopsis thaliana
AT5G42330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 16924608-16926607 Arabidopsis thaliana
AT5G42330 2.0kb downstream 2.0kb downstream 2896 true Chr5: 16926608-16929503 Arabidopsis thaliana
AT5G42330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 16927504-16929503 Arabidopsis thaliana
AT5G42330 5.0kb upstream 5.0kb upstream 5896 true Chr5: 16921608-16927503 Arabidopsis thaliana
AT5G42330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 16921608-16926607 Arabidopsis thaliana
AT5G42330 5.0kb downstream 5.0kb downstream 5896 true Chr5: 16926608-16932503 Arabidopsis thaliana
AT5G42330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 16927504-16932503 Arabidopsis thaliana
AT5G42330 10.0kb upstream 10.0kb upstream 10896 true Chr5: 16916608-16927503 Arabidopsis thaliana
AT5G42330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 16916608-16926607 Arabidopsis thaliana
AT5G42330 10.0kb downstream 10.0kb downstream 10896 true Chr5: 16926608-16937503 Arabidopsis thaliana
AT5G42330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 16927504-16937503 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027246 5273 Angiosperm View MSA
122362607 5261 Brassicaceae View MSA
123836472 5264 Brassicales-Malvales View MSA
124338156 5266 SBM View MSA
124237103 5268 Malvidae View MSA
124060616 5270 Rosid View MSA
123739195 5271 Pentapetalae View MSA
122789003 5272 Eudicot View MSA
121296929 5274 Embryophyte View MSA
123335035 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.005        
cufflinks 7.818        
cufflinks 1.795        
cufflinks 7.969        
cufflinks 0.831       Low
cufflinks 10.344       High

0 Strain