Gene : AT5G42560 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12300//PTHR12300:SF26 - HVA22-LIKE PROTEINS // HVA22-LIKE PROTEIN G-RELATED Genomic Order:  3585
Name:  ? AT5G42560 Secondary Identifier:  ? PAC:19669279
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G42560 0.5kb upstream 0.5kb upstream 2830 true Chr5: 17014423-17017252 Arabidopsis thaliana
AT5G42560 0.5kb upstream 0.5kb upstream 500 false Chr5: 17014423-17014922 Arabidopsis thaliana
AT5G42560 0.5kb downstream 0.5kb downstream 2830 true Chr5: 17014923-17017752 Arabidopsis thaliana
AT5G42560 0.5kb downstream 0.5kb downstream 500 false Chr5: 17017253-17017752 Arabidopsis thaliana
AT5G42560 1.0kb upstream 1.0kb upstream 3330 true Chr5: 17013923-17017252 Arabidopsis thaliana
AT5G42560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 17013923-17014922 Arabidopsis thaliana
AT5G42560 1.0kb downstream 1.0kb downstream 3330 true Chr5: 17014923-17018252 Arabidopsis thaliana
AT5G42560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 17017253-17018252 Arabidopsis thaliana
AT5G42560 2.0kb upstream 2.0kb upstream 4330 true Chr5: 17012923-17017252 Arabidopsis thaliana
AT5G42560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 17012923-17014922 Arabidopsis thaliana
AT5G42560 2.0kb downstream 2.0kb downstream 4330 true Chr5: 17014923-17019252 Arabidopsis thaliana
AT5G42560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 17017253-17019252 Arabidopsis thaliana
AT5G42560 5.0kb upstream 5.0kb upstream 7330 true Chr5: 17009923-17017252 Arabidopsis thaliana
AT5G42560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 17009923-17014922 Arabidopsis thaliana
AT5G42560 5.0kb downstream 5.0kb downstream 7330 true Chr5: 17014923-17022252 Arabidopsis thaliana
AT5G42560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 17017253-17022252 Arabidopsis thaliana
AT5G42560 10.0kb upstream 10.0kb upstream 12330 true Chr5: 17004923-17017252 Arabidopsis thaliana
AT5G42560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 17004923-17014922 Arabidopsis thaliana
AT5G42560 10.0kb downstream 10.0kb downstream 12330 true Chr5: 17014923-17027252 Arabidopsis thaliana
AT5G42560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 17017253-17027252 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362599 5261 Brassicaceae View MSA
123837415 5264 Brassicales-Malvales View MSA
124340785 5266 SBM View MSA
124237272 5268 Malvidae View MSA
124068207 5270 Rosid View MSA
123753523 5271 Pentapetalae View MSA
122794920 5272 Eudicot View MSA
122050664 5273 Angiosperm View MSA
121348530 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.752        
cufflinks 6.654        
cufflinks 4.364       Low
cufflinks 6.952       High
cufflinks 4.992        
cufflinks 6.691        

0 Strain