Gene : HCF109 A. thaliana TAIR10
Primary Identifier:  ? AT5G36170 Defline:  (1 of 1) PTHR11075:SF46 - PROTEIN HIGH CHLOROPHYLL FLUORESCENT 109
Genomic Order:  2923 Name:  ? AT5G36170
Secondary Identifier:  ? PAC:19672838
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G36170 0.5kb upstream 0.5kb upstream 2651 true Chr5: 14235876-14238526 Arabidopsis thaliana
AT5G36170 0.5kb upstream 0.5kb upstream 500 false Chr5: 14238027-14238526 Arabidopsis thaliana
AT5G36170 0.5kb downstream 0.5kb downstream 2651 true Chr5: 14235376-14238026 Arabidopsis thaliana
AT5G36170 0.5kb downstream 0.5kb downstream 500 false Chr5: 14235376-14235875 Arabidopsis thaliana
AT5G36170 1.0kb upstream 1.0kb upstream 3151 true Chr5: 14235876-14239026 Arabidopsis thaliana
AT5G36170 1.0kb upstream 1.0kb upstream 1000 false Chr5: 14238027-14239026 Arabidopsis thaliana
AT5G36170 1.0kb downstream 1.0kb downstream 3151 true Chr5: 14234876-14238026 Arabidopsis thaliana
AT5G36170 1.0kb downstream 1.0kb downstream 1000 false Chr5: 14234876-14235875 Arabidopsis thaliana
AT5G36170 2.0kb upstream 2.0kb upstream 4151 true Chr5: 14235876-14240026 Arabidopsis thaliana
AT5G36170 2.0kb upstream 2.0kb upstream 2000 false Chr5: 14238027-14240026 Arabidopsis thaliana
AT5G36170 2.0kb downstream 2.0kb downstream 4151 true Chr5: 14233876-14238026 Arabidopsis thaliana
AT5G36170 2.0kb downstream 2.0kb downstream 2000 false Chr5: 14233876-14235875 Arabidopsis thaliana
AT5G36170 5.0kb upstream 5.0kb upstream 7151 true Chr5: 14235876-14243026 Arabidopsis thaliana
AT5G36170 5.0kb upstream 5.0kb upstream 5000 false Chr5: 14238027-14243026 Arabidopsis thaliana
AT5G36170 5.0kb downstream 5.0kb downstream 7151 true Chr5: 14230876-14238026 Arabidopsis thaliana
AT5G36170 5.0kb downstream 5.0kb downstream 5000 false Chr5: 14230876-14235875 Arabidopsis thaliana
AT5G36170 10.0kb upstream 10.0kb upstream 12151 true Chr5: 14235876-14248026 Arabidopsis thaliana
AT5G36170 10.0kb upstream 10.0kb upstream 10000 false Chr5: 14238027-14248026 Arabidopsis thaliana
AT5G36170 10.0kb downstream 10.0kb downstream 12151 true Chr5: 14225876-14238026 Arabidopsis thaliana
AT5G36170 10.0kb downstream 10.0kb downstream 10000 false Chr5: 14225876-14235875 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368162 5261 Brassicaceae View MSA
123830529 5264 Brassicales-Malvales View MSA
124339538 5266 SBM View MSA
124243362 5268 Malvidae View MSA
124066936 5270 Rosid View MSA
123749031 5271 Pentapetalae View MSA
122791384 5272 Eudicot View MSA
122043845 5273 Angiosperm View MSA
121345012 5274 Embryophyte View MSA
123428713 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.409        
cufflinks 2.974        
cufflinks 17.846       High
cufflinks 2.957        
cufflinks 15.009        
cufflinks 2.408       Low

0 Strain