Gene : XGD1 A. thaliana TAIR10
Primary Identifier:  ? AT5G33290 Defline:  (1 of 2) K18789 - xylogalacturonan beta-1,3-xylosyltransferase (XGD1)
Genomic Order:  2790 Name:  ? AT5G33290
Secondary Identifier:  ? PAC:19672913
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5980 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G33290 0.5kb upstream 0.5kb upstream 4265 true Chr5: 12557756-12562020 Arabidopsis thaliana
AT5G33290 0.5kb upstream 0.5kb upstream 500 false Chr5: 12557756-12558255 Arabidopsis thaliana
AT5G33290 0.5kb downstream 0.5kb downstream 4265 true Chr5: 12558256-12562520 Arabidopsis thaliana
AT5G33290 0.5kb downstream 0.5kb downstream 500 false Chr5: 12562021-12562520 Arabidopsis thaliana
AT5G33290 1.0kb upstream 1.0kb upstream 4765 true Chr5: 12557256-12562020 Arabidopsis thaliana
AT5G33290 1.0kb upstream 1.0kb upstream 1000 false Chr5: 12557256-12558255 Arabidopsis thaliana
AT5G33290 1.0kb downstream 1.0kb downstream 4765 true Chr5: 12558256-12563020 Arabidopsis thaliana
AT5G33290 1.0kb downstream 1.0kb downstream 1000 false Chr5: 12562021-12563020 Arabidopsis thaliana
AT5G33290 2.0kb upstream 2.0kb upstream 5765 true Chr5: 12556256-12562020 Arabidopsis thaliana
AT5G33290 2.0kb upstream 2.0kb upstream 2000 false Chr5: 12556256-12558255 Arabidopsis thaliana
AT5G33290 2.0kb downstream 2.0kb downstream 5765 true Chr5: 12558256-12564020 Arabidopsis thaliana
AT5G33290 2.0kb downstream 2.0kb downstream 2000 false Chr5: 12562021-12564020 Arabidopsis thaliana
AT5G33290 5.0kb upstream 5.0kb upstream 8765 true Chr5: 12553256-12562020 Arabidopsis thaliana
AT5G33290 5.0kb upstream 5.0kb upstream 5000 false Chr5: 12553256-12558255 Arabidopsis thaliana
AT5G33290 5.0kb downstream 5.0kb downstream 8765 true Chr5: 12558256-12567020 Arabidopsis thaliana
AT5G33290 5.0kb downstream 5.0kb downstream 5000 false Chr5: 12562021-12567020 Arabidopsis thaliana
AT5G33290 10.0kb upstream 10.0kb upstream 13765 true Chr5: 12548256-12562020 Arabidopsis thaliana
AT5G33290 10.0kb upstream 10.0kb upstream 10000 false Chr5: 12548256-12558255 Arabidopsis thaliana
AT5G33290 10.0kb downstream 10.0kb downstream 13765 true Chr5: 12558256-12572020 Arabidopsis thaliana
AT5G33290 10.0kb downstream 10.0kb downstream 10000 false Chr5: 12562021-12572020 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364299 5261 Brassicaceae View MSA
123836868 5264 Brassicales-Malvales View MSA
124351163 5266 SBM View MSA
124252793 5268 Malvidae View MSA
124072198 5270 Rosid View MSA
123751032 5271 Pentapetalae View MSA
122797278 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.492        
cufflinks 3.067        
cufflinks 8.662        
cufflinks 4.137        
cufflinks 10.064        
cufflinks 2.379       Low

0 Strain