Gene : AT5G26830 A. thaliana TAIR10
Defline:  (1 of 1) PF00587//PF02824//PF03129//PF07973 - tRNA synthetase class II core domain (G, H, P, S and T) (tRNA-synt_2b) // TGS domain (TGS) // Anticodon binding domain (HGTP_anticodon) // Threonyl and Alanyl tRNA synthetase second additional domain (tRNA_SAD) Genomic Order:  2561
Name:  ? AT5G26830 Secondary Identifier:  ? PAC:19667477
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G26830 0.5kb upstream 0.5kb upstream 4983 true Chr5: 9436797-9441779 Arabidopsis thaliana
AT5G26830 0.5kb upstream 0.5kb upstream 500 false Chr5: 9436797-9437296 Arabidopsis thaliana
AT5G26830 0.5kb downstream 0.5kb downstream 4983 true Chr5: 9437297-9442279 Arabidopsis thaliana
AT5G26830 0.5kb downstream 0.5kb downstream 500 false Chr5: 9441780-9442279 Arabidopsis thaliana
AT5G26830 1.0kb upstream 1.0kb upstream 5483 true Chr5: 9436297-9441779 Arabidopsis thaliana
AT5G26830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 9436297-9437296 Arabidopsis thaliana
AT5G26830 1.0kb downstream 1.0kb downstream 5483 true Chr5: 9437297-9442779 Arabidopsis thaliana
AT5G26830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 9441780-9442779 Arabidopsis thaliana
AT5G26830 2.0kb upstream 2.0kb upstream 6483 true Chr5: 9435297-9441779 Arabidopsis thaliana
AT5G26830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 9435297-9437296 Arabidopsis thaliana
AT5G26830 2.0kb downstream 2.0kb downstream 6483 true Chr5: 9437297-9443779 Arabidopsis thaliana
AT5G26830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 9441780-9443779 Arabidopsis thaliana
AT5G26830 5.0kb upstream 5.0kb upstream 9483 true Chr5: 9432297-9441779 Arabidopsis thaliana
AT5G26830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 9432297-9437296 Arabidopsis thaliana
AT5G26830 5.0kb downstream 5.0kb downstream 9483 true Chr5: 9437297-9446779 Arabidopsis thaliana
AT5G26830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 9441780-9446779 Arabidopsis thaliana
AT5G26830 10.0kb upstream 10.0kb upstream 14483 true Chr5: 9427297-9441779 Arabidopsis thaliana
AT5G26830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 9427297-9437296 Arabidopsis thaliana
AT5G26830 10.0kb downstream 10.0kb downstream 14483 true Chr5: 9437297-9451779 Arabidopsis thaliana
AT5G26830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 9441780-9451779 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360218 5261 Brassicaceae View MSA
123828544 5264 Brassicales-Malvales View MSA
124337472 5266 SBM View MSA
124249574 5268 Malvidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.078        
cufflinks 25.296        
cufflinks 20.717        
cufflinks 28.4        
cufflinks 19.521       Low
cufflinks 30.808     High High

0 Strain