Gene : PRR5 A. thaliana TAIR10
Primary Identifier:  ? AT5G24470 Defline:  (1 of 1) K12130 - pseudo-response regulator 5 (PRR5)
Genomic Order:  2336 Name:  ? AT5G24470
Secondary Identifier:  ? PAC:19667430
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G24470 0.5kb upstream 0.5kb upstream 3423 true Chr5: 8355951-8359373 Arabidopsis thaliana
AT5G24470 0.5kb upstream 0.5kb upstream 500 false Chr5: 8358874-8359373 Arabidopsis thaliana
AT5G24470 0.5kb downstream 0.5kb downstream 3423 true Chr5: 8355451-8358873 Arabidopsis thaliana
AT5G24470 0.5kb downstream 0.5kb downstream 500 false Chr5: 8355451-8355950 Arabidopsis thaliana
AT5G24470 1.0kb upstream 1.0kb upstream 3923 true Chr5: 8355951-8359873 Arabidopsis thaliana
AT5G24470 1.0kb upstream 1.0kb upstream 1000 false Chr5: 8358874-8359873 Arabidopsis thaliana
AT5G24470 1.0kb downstream 1.0kb downstream 3923 true Chr5: 8354951-8358873 Arabidopsis thaliana
AT5G24470 1.0kb downstream 1.0kb downstream 1000 false Chr5: 8354951-8355950 Arabidopsis thaliana
AT5G24470 2.0kb upstream 2.0kb upstream 4923 true Chr5: 8355951-8360873 Arabidopsis thaliana
AT5G24470 2.0kb upstream 2.0kb upstream 2000 false Chr5: 8358874-8360873 Arabidopsis thaliana
AT5G24470 2.0kb downstream 2.0kb downstream 4923 true Chr5: 8353951-8358873 Arabidopsis thaliana
AT5G24470 2.0kb downstream 2.0kb downstream 2000 false Chr5: 8353951-8355950 Arabidopsis thaliana
AT5G24470 5.0kb upstream 5.0kb upstream 7923 true Chr5: 8355951-8363873 Arabidopsis thaliana
AT5G24470 5.0kb upstream 5.0kb upstream 5000 false Chr5: 8358874-8363873 Arabidopsis thaliana
AT5G24470 5.0kb downstream 5.0kb downstream 7923 true Chr5: 8350951-8358873 Arabidopsis thaliana
AT5G24470 5.0kb downstream 5.0kb downstream 5000 false Chr5: 8350951-8355950 Arabidopsis thaliana
AT5G24470 10.0kb upstream 10.0kb upstream 12923 true Chr5: 8355951-8368873 Arabidopsis thaliana
AT5G24470 10.0kb upstream 10.0kb upstream 10000 false Chr5: 8358874-8368873 Arabidopsis thaliana
AT5G24470 10.0kb downstream 10.0kb downstream 12923 true Chr5: 8345951-8358873 Arabidopsis thaliana
AT5G24470 10.0kb downstream 10.0kb downstream 10000 false Chr5: 8345951-8355950 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331053 5261 Brassicaceae Singleton cluster - no MSA
123836777 5264 Brassicales-Malvales View MSA
124350739 5266 SBM View MSA
124251308 5268 Malvidae View MSA
124070705 5270 Rosid View MSA
123743844 5271 Pentapetalae View MSA
122796844 5272 Eudicot View MSA
122049378 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121348343 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.605       Low
cufflinks 9.788        
cufflinks 8.744        
cufflinks 12.587        
cufflinks 17.69       High
cufflinks 5.818        

0 Strain