Gene : SMG7 A. thaliana TAIR10
Primary Identifier:  ? AT5G19400 Defline:  (1 of 1) K14409 - protein SMG7 (SMG7, EST1C)
Genomic Order:  1868 Name:  ? AT5G19400
Secondary Identifier:  ? PAC:19672743
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G19400 0.5kb upstream 0.5kb upstream 5513 true Chr5: 6539503-6545015 Arabidopsis thaliana
AT5G19400 0.5kb upstream 0.5kb upstream 500 false Chr5: 6539503-6540002 Arabidopsis thaliana
AT5G19400 0.5kb downstream 0.5kb downstream 5513 true Chr5: 6540003-6545515 Arabidopsis thaliana
AT5G19400 0.5kb downstream 0.5kb downstream 500 false Chr5: 6545016-6545515 Arabidopsis thaliana
AT5G19400 1.0kb upstream 1.0kb upstream 6013 true Chr5: 6539003-6545015 Arabidopsis thaliana
AT5G19400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6539003-6540002 Arabidopsis thaliana
AT5G19400 1.0kb downstream 1.0kb downstream 6013 true Chr5: 6540003-6546015 Arabidopsis thaliana
AT5G19400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6545016-6546015 Arabidopsis thaliana
AT5G19400 2.0kb upstream 2.0kb upstream 7013 true Chr5: 6538003-6545015 Arabidopsis thaliana
AT5G19400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6538003-6540002 Arabidopsis thaliana
AT5G19400 2.0kb downstream 2.0kb downstream 7013 true Chr5: 6540003-6547015 Arabidopsis thaliana
AT5G19400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6545016-6547015 Arabidopsis thaliana
AT5G19400 5.0kb upstream 5.0kb upstream 10013 true Chr5: 6535003-6545015 Arabidopsis thaliana
AT5G19400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6535003-6540002 Arabidopsis thaliana
AT5G19400 5.0kb downstream 5.0kb downstream 10013 true Chr5: 6540003-6550015 Arabidopsis thaliana
AT5G19400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6545016-6550015 Arabidopsis thaliana
AT5G19400 10.0kb upstream 10.0kb upstream 15013 true Chr5: 6530003-6545015 Arabidopsis thaliana
AT5G19400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6530003-6540002 Arabidopsis thaliana
AT5G19400 10.0kb downstream 10.0kb downstream 15013 true Chr5: 6540003-6555015 Arabidopsis thaliana
AT5G19400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6545016-6555015 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361596 5261 Brassicaceae View MSA
123841329 5264 Brassicales-Malvales View MSA
124338721 5266 SBM View MSA
124250329 5268 Malvidae View MSA
124074641 5270 Rosid View MSA
123750882 5271 Pentapetalae View MSA
122793069 5272 Eudicot View MSA
122041626 5273 Angiosperm View MSA
121347724 5274 Embryophyte View MSA
123426231 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.36        
cufflinks 8.535       Low
cufflinks 9.484        
cufflinks 9.872        
cufflinks 10.254       High
cufflinks 9.26        

0 Strain