Gene : MSL9 A. thaliana TAIR10
Primary Identifier:  ? AT5G19520 Defline:  (1 of 2) PTHR31618:SF3 - MECHANOSENSITIVE ION CHANNEL PROTEIN 10-RELATED
Genomic Order:  1882 Name:  ? AT5G19520
Secondary Identifier:  ? PAC:19672995
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G19520 0.5kb upstream 0.5kb upstream 4016 true Chr5: 6584921-6588936 Arabidopsis thaliana
AT5G19520 0.5kb upstream 0.5kb upstream 500 false Chr5: 6584921-6585420 Arabidopsis thaliana
AT5G19520 0.5kb downstream 0.5kb downstream 4016 true Chr5: 6585421-6589436 Arabidopsis thaliana
AT5G19520 0.5kb downstream 0.5kb downstream 500 false Chr5: 6588937-6589436 Arabidopsis thaliana
AT5G19520 1.0kb upstream 1.0kb upstream 4516 true Chr5: 6584421-6588936 Arabidopsis thaliana
AT5G19520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6584421-6585420 Arabidopsis thaliana
AT5G19520 1.0kb downstream 1.0kb downstream 4516 true Chr5: 6585421-6589936 Arabidopsis thaliana
AT5G19520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6588937-6589936 Arabidopsis thaliana
AT5G19520 2.0kb upstream 2.0kb upstream 5516 true Chr5: 6583421-6588936 Arabidopsis thaliana
AT5G19520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6583421-6585420 Arabidopsis thaliana
AT5G19520 2.0kb downstream 2.0kb downstream 5516 true Chr5: 6585421-6590936 Arabidopsis thaliana
AT5G19520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6588937-6590936 Arabidopsis thaliana
AT5G19520 5.0kb upstream 5.0kb upstream 8516 true Chr5: 6580421-6588936 Arabidopsis thaliana
AT5G19520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6580421-6585420 Arabidopsis thaliana
AT5G19520 5.0kb downstream 5.0kb downstream 8516 true Chr5: 6585421-6593936 Arabidopsis thaliana
AT5G19520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6588937-6593936 Arabidopsis thaliana
AT5G19520 10.0kb upstream 10.0kb upstream 13516 true Chr5: 6575421-6588936 Arabidopsis thaliana
AT5G19520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6575421-6585420 Arabidopsis thaliana
AT5G19520 10.0kb downstream 10.0kb downstream 13516 true Chr5: 6585421-6598936 Arabidopsis thaliana
AT5G19520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 6588937-6598936 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041489 5273 Angiosperm View MSA
122377927 5261 Brassicaceae View MSA
123801677 5264 Brassicales-Malvales View MSA
124298953 5266 SBM View MSA
124150482 5268 Malvidae View MSA
123876084 5270 Rosid View MSA
123753249 5271 Pentapetalae View MSA
122794299 5272 Eudicot View MSA
121309858 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.033     Low  
cufflinks 4.994        
cufflinks 0.043     Low  
cufflinks 11.893        
cufflinks 0.016     Low Low
cufflinks 18.216       High

0 Strain